Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACN08S_RS25175 | Genome accession | NZ_CP183265 |
| Coordinates | 2876747..2877040 (+) | Length | 97 a.a. |
| NCBI ID | WP_318422479.1 | Uniprot ID | - |
| Organism | Photobacterium leiognathi subsp. mandapamensis strain Sr2.36 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2871747..2882040
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN08S_RS25165 (ACN08S_25040) | hupB | 2874027..2874299 (+) | 273 | WP_008987659.1 | nucleoid-associated protein HU-beta | - |
| ACN08S_RS25170 (ACN08S_25045) | ppiD | 2874714..2876606 (+) | 1893 | WP_419209437.1 | peptidylprolyl isomerase | - |
| ACN08S_RS25175 (ACN08S_25050) | comEA | 2876747..2877040 (+) | 294 | WP_318422479.1 | ComEA family DNA-binding protein | Machinery gene |
| ACN08S_RS25180 (ACN08S_25055) | rrtA | 2877080..2877625 (-) | 546 | WP_419209438.1 | rhombosortase | - |
| ACN08S_RS25185 (ACN08S_25060) | - | 2877636..2878253 (+) | 618 | WP_419209439.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACN08S_RS25190 (ACN08S_25065) | - | 2878304..2879671 (-) | 1368 | WP_419209440.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACN08S_RS25195 (ACN08S_25070) | yfbR | 2879671..2880255 (-) | 585 | WP_008987653.1 | 5'-deoxynucleotidase | - |
| ACN08S_RS25200 (ACN08S_25075) | - | 2880410..2881624 (-) | 1215 | WP_045068031.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10410.06 Da Isoelectric Point: 7.2018
>NTDB_id=1104942 ACN08S_RS25175 WP_318422479.1 2876747..2877040(+) (comEA) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
MQSYQLFKVIALAGGLALVPLSHAAENKHEGIVKAVNINEANVEQLDILLDGIGAEKAQAIVDYRNANGKFVSADDLVKV
KGIGKATVEKNRKIIEL
MQSYQLFKVIALAGGLALVPLSHAAENKHEGIVKAVNINEANVEQLDILLDGIGAEKAQAIVDYRNANGKFVSADDLVKV
KGIGKATVEKNRKIIEL
Nucleotide
Download Length: 294 bp
>NTDB_id=1104942 ACN08S_RS25175 WP_318422479.1 2876747..2877040(+) (comEA) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
ATGCAGTCATACCAATTATTTAAAGTTATCGCCTTAGCTGGCGGATTAGCTTTGGTACCTTTAAGCCATGCTGCTGAAAA
TAAGCATGAAGGGATCGTTAAAGCAGTTAATATCAATGAAGCTAATGTTGAGCAATTAGATATCTTGCTAGATGGTATTG
GAGCAGAAAAAGCACAAGCGATAGTTGATTATCGTAATGCTAACGGTAAGTTTGTAAGTGCGGATGATTTAGTTAAAGTG
AAAGGGATCGGTAAAGCGACGGTTGAGAAAAATAGAAAGATCATTGAGCTGTAG
ATGCAGTCATACCAATTATTTAAAGTTATCGCCTTAGCTGGCGGATTAGCTTTGGTACCTTTAAGCCATGCTGCTGAAAA
TAAGCATGAAGGGATCGTTAAAGCAGTTAATATCAATGAAGCTAATGTTGAGCAATTAGATATCTTGCTAGATGGTATTG
GAGCAGAAAAAGCACAAGCGATAGTTGATTATCGTAATGCTAACGGTAAGTTTGTAAGTGCGGATGATTTAGTTAAAGTG
AAAGGGATCGGTAAAGCGACGGTTGAGAAAAATAGAAAGATCATTGAGCTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50.515 |
100 |
0.505 |
| comEA | Vibrio cholerae strain A1552 |
50.515 |
100 |
0.505 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
51.807 |
85.567 |
0.443 |
| comEA | Vibrio campbellii strain DS40M4 |
52.5 |
82.474 |
0.433 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
58.333 |
61.856 |
0.361 |