Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACN08S_RS21330 Genome accession   NZ_CP183265
Coordinates   2032897..2034423 (+) Length   508 a.a.
NCBI ID   WP_419209694.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr2.36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2027897..2039423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08S_RS21315 (ACN08S_21315) ilvE 2029654..2030586 (-) 933 WP_419209132.1 branched-chain-amino-acid transaminase -
  ACN08S_RS21320 (ACN08S_21320) ilvM 2030608..2030856 (-) 249 WP_008988341.1 acetolactate synthase 2 small subunit -
  ACN08S_RS21325 (ACN08S_21325) ilvG 2030856..2032502 (-) 1647 WP_419209133.1 acetolactate synthase 2 catalytic subunit -
  ACN08S_RS21330 (ACN08S_21330) comM 2032897..2034423 (+) 1527 WP_419209694.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACN08S_RS21335 (ACN08S_21335) - 2034491..2035093 (-) 603 WP_008988344.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACN08S_RS21340 (ACN08S_21340) - 2035167..2036153 (-) 987 WP_419209134.1 serine/threonine protein kinase -
  ACN08S_RS21345 (ACN08S_21345) ccoG 2036264..2037691 (-) 1428 WP_419209135.1 cytochrome c oxidase accessory protein CcoG -
  ACN08S_RS21350 (ACN08S_21350) - 2037882..2038148 (-) 267 WP_008988347.1 YihD family protein -
  ACN08S_RS21355 (ACN08S_21355) - 2038323..2038523 (-) 201 WP_061014721.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54761.70 Da        Isoelectric Point: 8.0572

>NTDB_id=1104936 ACN08S_RS21330 WP_419209694.1 2032897..2034423(+) (comM) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
MTLAIVHSRACVGVQAPPVTVEVHLSNGLPSFTLVGLPETTVKEAKDRVRSAIINANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILTASGQIPSDKLSDHEFIGELALSGELRPVKGALPAALAALKAKRCFVVPDRNGDQVALVGKETHKSAASL
LAVCGYLCGQQQLGLQFAEHSSQADEHNDRDMQDIIGQQQGKRALEIAVAGGHNLLFLGPPGTGKTMLASRLCDLLPPMS
HEEALETAAVTSLTQQSLHQGNWLKRPFRTPHHSSSMAALVGGGSVPKPGEISLAHNGLLFLDEMLEFERKVLDSLREPL
ESGHIVISRASSKTTFPARFQLIGALNPSPSGYYDGNQTRTNPQAILRYLSRLSGPLLDRFDMSIEIPALPRGTLTEGGD
RGDATAVIKSRVDQARERMLARSGKVNALLSTRELDQHCPLQQADAAFLENALHQLGLSIRAYHRIIKVARTIADLAGET
SIGRGHLAEALGYRSMDRLLKQINSQVV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1104936 ACN08S_RS21330 WP_419209694.1 2032897..2034423(+) (comM) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
ATGACACTTGCAATTGTTCATAGCCGAGCCTGTGTAGGTGTGCAGGCGCCACCAGTTACGGTTGAAGTACATTTAAGTAA
TGGTTTACCCAGTTTTACTTTAGTGGGGTTACCTGAGACAACGGTCAAAGAAGCCAAAGACCGGGTTCGCAGCGCTATTA
TTAATGCTAACTTTGAGTTTCCTTCTCGGCGTATTACGGTCAATTTGGCCCCTGCCGATCTACCGAAAGAAGGTGGACGT
TTTGATCTACCTATCGCCCTTGGTATTCTCACTGCTTCTGGGCAAATTCCGTCTGATAAGCTAAGCGATCATGAGTTTAT
TGGTGAGCTTGCACTCTCAGGTGAGTTGCGCCCTGTTAAAGGTGCTTTACCGGCGGCATTAGCCGCACTGAAAGCCAAAC
GTTGTTTTGTGGTGCCTGATCGCAATGGCGATCAAGTGGCGTTGGTGGGCAAAGAGACTCATAAATCAGCAGCAAGCTTG
CTTGCGGTTTGTGGTTATCTTTGTGGGCAACAACAATTAGGGTTGCAGTTTGCTGAGCATAGCTCTCAAGCTGATGAGCA
CAATGATCGCGACATGCAAGATATCATTGGTCAGCAACAAGGAAAGCGCGCATTAGAAATAGCCGTAGCTGGCGGTCACA
ACTTATTGTTTCTAGGGCCGCCAGGAACGGGTAAAACCATGCTTGCTTCAAGGTTGTGTGATTTATTGCCACCGATGAGT
CATGAAGAAGCGCTAGAAACCGCTGCTGTTACTTCTCTTACCCAGCAATCATTACATCAAGGTAATTGGCTTAAACGCCC
TTTTCGTACTCCACATCATTCAAGCTCAATGGCTGCCTTAGTGGGCGGTGGCTCGGTGCCGAAACCGGGAGAAATATCGC
TTGCTCACAACGGCTTATTGTTCCTAGATGAAATGCTCGAGTTTGAGCGCAAAGTACTAGACTCATTACGGGAGCCGCTT
GAGTCTGGGCATATCGTGATTTCTCGCGCCAGCAGTAAAACGACCTTTCCTGCTCGCTTTCAGCTGATTGGTGCATTAAA
TCCTAGCCCTTCGGGTTATTACGATGGCAATCAAACACGCACCAATCCTCAAGCAATATTACGCTATTTAAGCCGTTTGA
GTGGACCATTACTTGATAGGTTTGATATGTCGATTGAGATCCCAGCCTTGCCTCGTGGCACATTAACCGAAGGTGGTGAT
CGGGGCGATGCGACTGCCGTGATTAAGTCTCGAGTCGATCAAGCACGAGAGCGAATGTTAGCGCGAAGTGGCAAAGTAAA
TGCGTTGCTATCAACCCGAGAGCTCGATCAACATTGTCCATTACAGCAAGCAGATGCGGCTTTTTTAGAAAACGCACTGC
ATCAGCTAGGACTATCGATTAGGGCGTATCATCGGATTATTAAAGTTGCACGTACGATAGCGGATTTAGCTGGTGAAACC
AGTATTGGTCGTGGGCATCTTGCTGAAGCATTGGGTTATCGTTCGATGGATAGGCTCTTAAAGCAGATCAATAGCCAAGT
GGTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

77.559

100

0.776
  comM Vibrio campbellii strain DS40M4

77.165

100

0.772
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Haemophilus influenzae Rd KW20

61.614

100

0.616
  comM Legionella pneumophila str. Paris

50.201

98.031

0.492
  comM Legionella pneumophila strain ERS1305867

50.201

98.031

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.209

99.803

0.421

Multiple sequence alignment