Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACN08M_RS11005 | Genome accession | NZ_CP183250 |
| Coordinates | 2324347..2324640 (+) | Length | 97 a.a. |
| NCBI ID | WP_008987657.1 | Uniprot ID | X0NXM5 |
| Organism | Photobacterium leiognathi subsp. mandapamensis strain Sc16.3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2319347..2329640
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN08M_RS10995 (ACN08M_10995) | hupB | 2321627..2321899 (+) | 273 | WP_008987659.1 | nucleoid-associated protein HU-beta | - |
| ACN08M_RS11000 (ACN08M_11000) | ppiD | 2322314..2324206 (+) | 1893 | WP_419239800.1 | peptidylprolyl isomerase | - |
| ACN08M_RS11005 (ACN08M_11005) | comEA | 2324347..2324640 (+) | 294 | WP_008987657.1 | ComEA family DNA-binding protein | Machinery gene |
| ACN08M_RS11010 (ACN08M_11010) | rrtA | 2324680..2325225 (-) | 546 | WP_419239801.1 | rhombosortase | - |
| ACN08M_RS11015 (ACN08M_11015) | - | 2325236..2325853 (+) | 618 | WP_318456175.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACN08M_RS11020 (ACN08M_11020) | - | 2325904..2327271 (-) | 1368 | WP_419239802.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACN08M_RS11025 (ACN08M_11025) | yfbR | 2327271..2327855 (-) | 585 | WP_419239803.1 | 5'-deoxynucleotidase | - |
| ACN08M_RS11030 (ACN08M_11030) | - | 2328010..2329224 (-) | 1215 | WP_419239804.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10382.01 Da Isoelectric Point: 7.2018
>NTDB_id=1104864 ACN08M_RS11005 WP_008987657.1 2324347..2324640(+) (comEA) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
MQSYQLFKVIALAGGLALVPLSHAAENKHEGIVKAVNINEANVEQLDILLDGIGAEKAQAIVDYRNANGKFASADDLVKV
KGIGKATVEKNRKIIEL
MQSYQLFKVIALAGGLALVPLSHAAENKHEGIVKAVNINEANVEQLDILLDGIGAEKAQAIVDYRNANGKFASADDLVKV
KGIGKATVEKNRKIIEL
Nucleotide
Download Length: 294 bp
>NTDB_id=1104864 ACN08M_RS11005 WP_008987657.1 2324347..2324640(+) (comEA) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
ATGCAGTCATACCAATTATTTAAAGTTATCGCCTTAGCTGGCGGATTAGCTTTGGTACCTTTAAGCCATGCTGCTGAAAA
TAAGCATGAAGGGATCGTTAAAGCAGTTAATATCAATGAAGCTAATGTTGAGCAATTAGATATCTTGCTAGATGGTATTG
GGGCAGAAAAAGCACAAGCGATAGTTGATTATCGTAATGCTAACGGTAAGTTTGCGAGTGCGGATGATTTAGTTAAAGTG
AAAGGGATCGGTAAAGCGACGGTTGAGAAAAATAGAAAGATCATTGAGCTGTAG
ATGCAGTCATACCAATTATTTAAAGTTATCGCCTTAGCTGGCGGATTAGCTTTGGTACCTTTAAGCCATGCTGCTGAAAA
TAAGCATGAAGGGATCGTTAAAGCAGTTAATATCAATGAAGCTAATGTTGAGCAATTAGATATCTTGCTAGATGGTATTG
GGGCAGAAAAAGCACAAGCGATAGTTGATTATCGTAATGCTAACGGTAAGTTTGCGAGTGCGGATGATTTAGTTAAAGTG
AAAGGGATCGGTAAAGCGACGGTTGAGAAAAATAGAAAGATCATTGAGCTGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50.515 |
100 |
0.505 |
| comEA | Vibrio cholerae strain A1552 |
50.515 |
100 |
0.505 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
51.807 |
85.567 |
0.443 |
| comEA | Vibrio campbellii strain DS40M4 |
52.5 |
82.474 |
0.433 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
58.333 |
61.856 |
0.361 |