Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACN08M_RS07130 Genome accession   NZ_CP183250
Coordinates   1455354..1456880 (+) Length   508 a.a.
NCBI ID   WP_419240164.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc16.3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1450354..1461880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08M_RS07115 (ACN08M_07115) ilvE 1452111..1453043 (-) 933 WP_008988340.1 branched-chain-amino-acid transaminase -
  ACN08M_RS07120 (ACN08M_07120) ilvM 1453065..1453313 (-) 249 WP_008988341.1 acetolactate synthase 2 small subunit -
  ACN08M_RS07125 (ACN08M_07125) ilvG 1453313..1454959 (-) 1647 WP_107185793.1 acetolactate synthase 2 catalytic subunit -
  ACN08M_RS07130 (ACN08M_07130) comM 1455354..1456880 (+) 1527 WP_419240164.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACN08M_RS07135 (ACN08M_07135) - 1456948..1457550 (-) 603 WP_060990162.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACN08M_RS07140 (ACN08M_07140) - 1457624..1458610 (-) 987 WP_419239534.1 serine/threonine protein kinase -
  ACN08M_RS07145 (ACN08M_07145) ccoG 1458721..1460148 (-) 1428 WP_419239535.1 cytochrome c oxidase accessory protein CcoG -
  ACN08M_RS07150 (ACN08M_07150) - 1460339..1460605 (-) 267 WP_008988347.1 YihD family protein -
  ACN08M_RS07155 (ACN08M_07155) - 1460780..1460980 (-) 201 WP_305830116.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54705.64 Da        Isoelectric Point: 7.5786

>NTDB_id=1104858 ACN08M_RS07130 WP_419240164.1 1455354..1456880(+) (comM) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
MTLAIVHSRACVGVQAPPVTVEVHLSNGLPSFTLVGLPETTVKEAKDRVRSAIINANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPSDKLSDHEFIGELALSGELRPVKGALPAALAALKAKRCFVVPDCNGDQVALVGKEIHKSAASL
LAVCGYLCGQQQLALQFAEHSSQADEHNDRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPPMS
HEEALETAAVTSLTQQSLHQGNWLKRPFRTPHHSSSMAALVGGGSVPKPGEISLAHNGLLFLDEMPEFERKVLDSLREPL
ESGHIVISRASSKTTFPARFQLIGALNPSPSGYYDGNQTRTNPQAILRYLSRLSGPLLDRFDMSIEIPALPRGTLTEGGD
RGDTTAEIKSRVDLARERMLARSGKVNALLSTRELDQHCPLQQADAAFLENALHQLGLSIRAYHRIIKVARTIADLAGET
SIGRGHLAEALGYRSMDRLLKQINSQVV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1104858 ACN08M_RS07130 WP_419240164.1 1455354..1456880(+) (comM) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
ATGACACTTGCAATTGTTCATAGCCGAGCCTGTGTAGGTGTGCAGGCACCACCAGTTACGGTTGAAGTACATTTAAGTAA
TGGTCTACCCAGTTTTACGTTAGTGGGGTTACCTGAAACGACGGTCAAAGAGGCCAAAGATCGGGTTCGTAGCGCTATTA
TTAATGCTAACTTTGAGTTTCCTTCTCGGCGTATTACGGTCAATTTGGCCCCTGCCGATCTACCGAAAGAAGGTGGACGT
TTTGATCTACCCATCGCCCTTGGTATTCTCGCAGCTTCTGGGCAAATTCCGTCTGATAAGCTAAGCGATCATGAGTTTAT
TGGTGAGCTTGCACTCTCAGGAGAGTTGCGTCCTGTTAAAGGTGCTTTACCTGCAGCATTAGCGGCACTGAAAGCCAAAC
GTTGTTTTGTGGTGCCTGATTGCAATGGCGATCAAGTGGCATTGGTGGGTAAAGAAATCCATAAGTCAGCAGCAAGCTTA
CTTGCGGTTTGTGGTTATCTTTGTGGGCAACAGCAATTAGCGTTACAGTTTGCAGAACACAGCTCTCAAGCCGATGAACA
CAATGATCGAGACATGCAAGATATCATCGGTCAGCAACAAGGAAAGCGCGCATTAGAAATAGCTGCAGCTGGCGGTCACA
ACTTATTGTTTCTAGGGCCACCAGGAACGGGCAAAACTATGCTTGCCTCAAGGTTGTGTGATTTATTACCGCCAATGAGT
CATGAAGAAGCGCTAGAAACCGCTGCTGTTACTTCTCTTACCCAGCAATCATTACATCAAGGTAATTGGCTTAAACGCCC
TTTTCGTACTCCACACCATTCAAGTTCGATGGCGGCTTTAGTGGGCGGAGGCTCTGTGCCAAAACCGGGAGAAATATCAC
TTGCTCACAATGGCTTACTGTTTCTAGATGAGATGCCCGAGTTTGAGCGCAAAGTATTAGATTCATTACGGGAGCCGCTT
GAATCTGGGCATATCGTGATTTCTCGCGCCAGCAGTAAAACGACCTTTCCAGCCCGCTTTCAGCTGATTGGTGCATTAAA
TCCTAGCCCGTCTGGTTACTACGATGGCAATCAAACACGTACCAATCCTCAAGCGATATTGCGCTATTTAAGCCGTTTAA
GTGGACCATTACTTGATAGGTTTGATATGTCGATTGAGATCCCAGCCTTGCCTCGTGGCACATTGACCGAAGGTGGTGAT
CGAGGCGATACGACAGCTGAGATTAAGTCTCGGGTCGATCTGGCAAGAGAGCGAATGTTAGCGAGAAGTGGCAAAGTGAA
TGCGTTGCTCTCAACCCGAGAGCTTGATCAACATTGTCCATTACAGCAAGCAGATGCGGCTTTTTTAGAAAACGCACTGC
ATCAGCTAGGACTATCGATTAGGGCGTATCATCGGATTATTAAAGTGGCACGCACGATTGCGGATTTAGCTGGTGAAACC
AGTATTGGTCGTGGGCATCTTGCTGAAGCATTGGGCTATCGTTCGATGGATAGACTCTTAAAGCAGATCAATAGCCAAGT
GGTGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

78.15

100

0.782
  comM Vibrio campbellii strain DS40M4

77.559

100

0.776
  comM Glaesserella parasuis strain SC1401

64.244

100

0.644
  comM Haemophilus influenzae Rd KW20

62.402

100

0.624
  comM Legionella pneumophila str. Paris

50.803

98.031

0.498
  comM Legionella pneumophila strain ERS1305867

50.803

98.031

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

99.803

0.427

Multiple sequence alignment