Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACN08T_RS12985 | Genome accession | NZ_CP183248 |
| Coordinates | 2760965..2761258 (-) | Length | 97 a.a. |
| NCBI ID | WP_318422479.1 | Uniprot ID | - |
| Organism | Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2755965..2766258
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN08T_RS12960 (ACN08T_12960) | - | 2756381..2757595 (+) | 1215 | WP_008987652.1 | pyridoxal phosphate-dependent aminotransferase | - |
| ACN08T_RS12965 (ACN08T_12965) | yfbR | 2757750..2758334 (+) | 585 | WP_045062583.1 | 5'-deoxynucleotidase | - |
| ACN08T_RS12970 (ACN08T_12970) | - | 2758334..2759701 (+) | 1368 | WP_419205952.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACN08T_RS12975 (ACN08T_12975) | - | 2759752..2760369 (-) | 618 | WP_419205953.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACN08T_RS12980 (ACN08T_12980) | rrtA | 2760380..2760925 (+) | 546 | WP_318454054.1 | rhombosortase | - |
| ACN08T_RS12985 (ACN08T_12985) | comEA | 2760965..2761258 (-) | 294 | WP_318422479.1 | ComEA family DNA-binding protein | Machinery gene |
| ACN08T_RS12990 (ACN08T_12990) | ppiD | 2761399..2763291 (-) | 1893 | WP_305814191.1 | peptidylprolyl isomerase | - |
| ACN08T_RS12995 (ACN08T_12995) | hupB | 2763706..2763978 (-) | 273 | WP_008987659.1 | nucleoid-associated protein HU-beta | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10410.06 Da Isoelectric Point: 7.2018
>NTDB_id=1104829 ACN08T_RS12985 WP_318422479.1 2760965..2761258(-) (comEA) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
MQSYQLFKVIALAGGLALVPLSHAAENKHEGIVKAVNINEANVEQLDILLDGIGAEKAQAIVDYRNANGKFVSADDLVKV
KGIGKATVEKNRKIIEL
MQSYQLFKVIALAGGLALVPLSHAAENKHEGIVKAVNINEANVEQLDILLDGIGAEKAQAIVDYRNANGKFVSADDLVKV
KGIGKATVEKNRKIIEL
Nucleotide
Download Length: 294 bp
>NTDB_id=1104829 ACN08T_RS12985 WP_318422479.1 2760965..2761258(-) (comEA) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
ATGCAGTCATACCAATTATTTAAAGTTATCGCCTTAGCTGGCGGATTAGCTTTAGTACCTTTAAGCCATGCTGCTGAAAA
TAAGCATGAAGGGATCGTTAAAGCCGTTAATATCAATGAAGCTAATGTTGAGCAATTAGATATCTTGCTAGATGGTATTG
GGGCAGAAAAAGCACAAGCGATTGTTGATTATCGTAATGCTAACGGTAAGTTTGTGAGTGCGGATGATTTAGTTAAAGTG
AAAGGGATCGGTAAAGCGACGGTTGAGAAAAATAGAAAGATCATTGAGCTGTAG
ATGCAGTCATACCAATTATTTAAAGTTATCGCCTTAGCTGGCGGATTAGCTTTAGTACCTTTAAGCCATGCTGCTGAAAA
TAAGCATGAAGGGATCGTTAAAGCCGTTAATATCAATGAAGCTAATGTTGAGCAATTAGATATCTTGCTAGATGGTATTG
GGGCAGAAAAAGCACAAGCGATTGTTGATTATCGTAATGCTAACGGTAAGTTTGTGAGTGCGGATGATTTAGTTAAAGTG
AAAGGGATCGGTAAAGCGACGGTTGAGAAAAATAGAAAGATCATTGAGCTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50.515 |
100 |
0.505 |
| comEA | Vibrio cholerae strain A1552 |
50.515 |
100 |
0.505 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
51.807 |
85.567 |
0.443 |
| comEA | Vibrio campbellii strain DS40M4 |
52.5 |
82.474 |
0.433 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
58.333 |
61.856 |
0.361 |