Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACN08T_RS01725 Genome accession   NZ_CP183248
Coordinates   351856..353382 (-) Length   508 a.a.
NCBI ID   WP_419206115.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 346856..358382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08T_RS01700 (ACN08T_01700) - 347756..347956 (+) 201 WP_023934013.1 hypothetical protein -
  ACN08T_RS01705 (ACN08T_01705) - 348131..348397 (+) 267 WP_008988347.1 YihD family protein -
  ACN08T_RS01710 (ACN08T_01710) ccoG 348588..350015 (+) 1428 WP_419205090.1 cytochrome c oxidase accessory protein CcoG -
  ACN08T_RS01715 (ACN08T_01715) - 350126..351112 (+) 987 WP_419205091.1 serine/threonine protein kinase -
  ACN08T_RS01720 (ACN08T_01720) - 351186..351788 (+) 603 WP_060990162.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACN08T_RS01725 (ACN08T_01725) comM 351856..353382 (-) 1527 WP_419206115.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACN08T_RS01730 (ACN08T_01730) ilvG 353777..355423 (+) 1647 WP_419205092.1 acetolactate synthase 2 catalytic subunit -
  ACN08T_RS01735 (ACN08T_01735) ilvM 355423..355671 (+) 249 WP_008988341.1 acetolactate synthase 2 small subunit -
  ACN08T_RS01740 (ACN08T_01740) ilvE 355693..356625 (+) 933 WP_008988340.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54773.62 Da        Isoelectric Point: 7.8126

>NTDB_id=1104802 ACN08T_RS01725 WP_419206115.1 351856..353382(-) (comM) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
MTLAIVHSRACVGVQAPPVTVEVHLSNGLPSFTLVGLPETTVKEAKDRVRSAIINANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPSDKLSDHEFIGELALSGELRPVKGALPAALAALKAKRCFVVPDRNGDQVALVGKETHKSAASL
LAVCGYLCGQQQLGLQFAEHSSQADEHNDRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPPMS
HEEALETAAVTSLTQQSLHQGNWLKRPFRTPHHSSSMAALVGGGSVPKPGEISLAHNGLLFLDEMPEFERKVLDSLREPL
ESGHIVISRASSKTTFPARFQLIGALNPSPSGYYDGNQTRTNPQAILRYLSRLSGPLLDRFDMSIEIPALPRGTLTEGGD
RGDTTAEIKSRVDQARERMLARSGKVNALLSTRELDQYCPLQQADAAFLENALHQLGLSIRAYHRIIKVARTIADLAGET
SIGRGHLAEALGYRSMDRLLKQINSQVV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1104802 ACN08T_RS01725 WP_419206115.1 351856..353382(-) (comM) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
ATGACACTTGCAATTGTTCATAGCCGAGCCTGTGTAGGTGTGCAGGCGCCACCAGTTACGGTTGAAGTACATTTAAGTAA
TGGTCTACCCAGTTTTACTTTAGTGGGGTTGCCTGAGACAACGGTCAAAGAAGCCAAAGATCGGGTTCGTAGCGCTATTA
TTAATGCTAACTTTGAGTTTCCTTCTCGGCGTATTACGGTCAATTTGGCCCCTGCCGATCTACCGAAAGAAGGTGGACGT
TTTGATCTACCCATCGCCCTTGGTATTCTCGCAGCTTCTGGGCAAATTCCGTCTGATAAGCTAAGCGATCATGAGTTTAT
TGGTGAGCTTGCACTCTCAGGTGAGTTGCGCCCTGTTAAAGGTGCTTTACCTGCAGCATTAGCTGCACTGAAAGCCAAAC
GTTGTTTTGTGGTGCCTGATCGCAATGGCGATCAAGTGGCATTGGTGGGTAAAGAAACCCATAAATCAGCAGCAAGCTTA
CTTGCGGTTTGCGGTTATCTTTGTGGGCAACAGCAATTAGGGTTGCAGTTTGCTGAGCATAGCTCTCAAGCTGATGAGCA
CAATGATCGCGACATGCAAGATATCATCGGTCAGCAACAAGGAAAGCGCGCATTAGAAATAGCTGCAGCTGGCGGTCACA
ACTTATTGTTTCTAGGGCCACCAGGAACGGGCAAAACTATGCTTGCCTCAAGGTTGTGTGATTTATTACCGCCAATGAGT
CATGAAGAAGCGTTAGAAACCGCTGCTGTTACTTCTCTTACCCAGCAATCATTACATCAAGGTAATTGGCTTAAACGCCC
TTTTCGTACTCCACATCATTCCAGCTCAATGGCTGCCTTAGTGGGCGGTGGCTCGGTGCCGAAACCAGGAGAAATATCGC
TTGCTCACAATGGCTTATTGTTTCTAGATGAGATGCCCGAGTTTGAGCGCAAAGTGCTCGATTCATTACGGGAGCCGCTT
GAATCTGGGCATATCGTGATTTCTCGTGCCAGCAGTAAAACTACCTTTCCTGCCCGCTTTCAGCTGATTGGTGCATTAAA
TCCTAGCCCTTCGGGTTATTACGATGGCAATCAAACACGCACCAATCCTCAAGCAATATTGCGCTATTTAAGCCGTTTAA
GTGGACCATTACTTGATAGGTTTGATATGTCGATTGAGATCCCAGCCCTGCCTCGTGGCACATTAACCGAAGGTGGTGAT
CGGGGCGATACGACTGCAGAGATTAAGTCTCGGGTCGATCAGGCTCGAGAGCGAATGTTAGCGCGAAGTGGTAAAGTAAA
TGCGTTGCTATCAACCCGAGAGCTTGATCAATATTGTCCATTACAGCAAGCAGATGCGGCTTTTTTAGAAAACGCACTGC
ATCAGCTAGGACTATCGATTAGGGCGTATCATCGGATTATTAAAGTGGCACGTACGATAGCAGATTTAGCTGGTGAAACC
AGTATTGGTCGTGGACATCTTGCTGAAGCATTGGGCTATCGTTCGATGGATAGACTCTTAAAGCAGATCAATAGCCAAGT
GGTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

78.346

100

0.783
  comM Vibrio campbellii strain DS40M4

77.756

100

0.778
  comM Glaesserella parasuis strain SC1401

64.047

100

0.642
  comM Haemophilus influenzae Rd KW20

62.402

100

0.624
  comM Legionella pneumophila str. Paris

50.803

98.031

0.498
  comM Legionella pneumophila strain ERS1305867

50.803

98.031

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

99.803

0.427

Multiple sequence alignment