Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACN09C_RS25470 Genome accession   NZ_CP183242
Coordinates   5479331..5480854 (+) Length   507 a.a.
NCBI ID   WP_223498609.1    Uniprot ID   -
Organism   Serratia fonticola strain GTA-SR06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5474331..5485854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN09C_RS25445 (ACN09C_25390) ilvE 5474533..5475459 (-) 927 WP_021181823.1 branched-chain-amino-acid transaminase -
  ACN09C_RS25450 (ACN09C_25395) ilvM 5475481..5475738 (-) 258 WP_021181824.1 acetolactate synthase 2 small subunit -
  ACN09C_RS25455 (ACN09C_25400) ilvG 5475735..5477381 (-) 1647 WP_037376516.1 acetolactate synthase 2 catalytic subunit -
  ACN09C_RS25460 (ACN09C_25405) ilvL 5477523..5477621 (-) 99 WP_071681478.1 ilv operon leader peptide -
  ACN09C_RS25465 (ACN09C_25410) - 5477755..5478987 (-) 1233 WP_094982437.1 MFS transporter -
  ACN09C_RS25470 (ACN09C_25415) comM 5479331..5480854 (+) 1524 WP_223498609.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACN09C_RS25475 (ACN09C_25420) - 5480883..5481221 (-) 339 WP_021181829.1 DUF413 domain-containing protein -
  ACN09C_RS25480 (ACN09C_25425) hdfR 5481341..5482168 (+) 828 WP_021807365.1 HTH-type transcriptional regulator HdfR -
  ACN09C_RS25485 (ACN09C_25430) yjfF 5482173..5483165 (-) 993 WP_037376500.1 galactofuranose ABC transporter, permease protein YjfF -
  ACN09C_RS25490 (ACN09C_25435) ytfT 5483162..5484163 (-) 1002 WP_223498610.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  ACN09C_RS25495 (ACN09C_25440) ytfR 5484181..5485695 (-) 1515 WP_094982440.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54712.07 Da        Isoelectric Point: 8.5222

>NTDB_id=1104773 ACN09C_RS25470 WP_223498609.1 5479331..5480854(+) (comM) [Serratia fonticola strain GTA-SR06]
MSLAVIYTRATIGVQAPSVMVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLAHYEFLGELALSGALRAVHGAIPAAIAAAEAKRELILAAANGKEAGLLPNSTTRVAEHL
LEVCAFLQGKGELPIAVAPPPAATSTETADLQEVIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLNGLLPPLSD
REALESVAVASLLHHPDETLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVRFPARVQLIAAMNPSPTGHYQGIHNRTPPQQILRYLGRLSGPFLDRFDLSIEVPLLPPGVLAKQHHA
GESSQQVRQRVLVARERQLARAGKVNALLSNREVDRDCHLPAAEAEFLERTLSQLGLSVRAWHRILKVARTLADLTGEQQ
IDKRHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1104773 ACN09C_RS25470 WP_223498609.1 5479331..5480854(+) (comM) [Serratia fonticola strain GTA-SR06]
ATGTCACTGGCGGTAATCTATACCCGTGCCACGATCGGCGTGCAGGCACCTTCGGTCATGGTTGAAGTCCATATCAGCAA
CGGATTACCCGGCCTCACGCTGGTCGGTCTACCGGAAACCACGGTGAAAGAAGCCCGTGACCGGGTGCGCAGCGCACTGA
TCAACAACGGCTTCACCTTTCCGGCCAAACGCATCACCGTCAATCTGGCACCCGCCGATTTGCCTAAGGAAGGGGGGCGC
TATGATTTACCCATTGCGCTGGCCATTCTGGCGGCCTCAGAACAGTTGCCAGCAGATAAGTTGGCGCACTATGAGTTCCT
GGGTGAATTGGCGCTTTCTGGCGCATTGAGGGCGGTGCACGGCGCCATTCCGGCGGCAATAGCGGCAGCCGAGGCCAAGC
GTGAGCTGATCCTCGCAGCGGCCAACGGCAAAGAGGCAGGGTTGCTTCCCAACAGCACGACCCGAGTTGCGGAACATTTG
CTTGAGGTTTGCGCTTTTTTGCAAGGTAAGGGTGAGCTGCCGATCGCCGTAGCGCCCCCTCCGGCCGCCACGTCAACGGA
AACTGCCGACCTGCAGGAAGTCATTGGCCAGGAGCAGGCAAAACGAGCGTTGGAAATTGCCGCGGCCGGGGGCCACAACC
TATTGCTGCTTGGCCCTCCGGGCACCGGAAAAACCATGCTGGCCAGCCGCCTCAACGGTTTGCTGCCGCCGTTAAGCGAT
CGGGAGGCGTTGGAAAGCGTGGCCGTTGCCAGCTTATTGCATCACCCTGATGAAACCCTGCCATGGCGACAGCGGCCGTT
TCGTGCCCCGCATCACAGCGCTTCGATGGCTGCACTGGTTGGAGGTGGTTCCTTGCCACGGCCAGGGGAAATCTCCATGG
CGCACAACGGCGTGCTATTTCTGGATGAGTTACCGGAATTTGAACGGCGAGTATTGGATGCGCTGCGTGAGCCGCTGGAA
TCCGGTGAAATCGTCATCTCACGCGCTAGTGCCAAGGTACGCTTCCCAGCCAGGGTGCAGCTGATTGCAGCGATGAACCC
CAGCCCAACCGGACACTATCAGGGCATACACAACCGCACGCCACCGCAGCAGATTTTGCGCTACCTCGGCAGGCTCTCTG
GCCCCTTCCTCGATCGATTTGATTTGTCGATTGAGGTGCCACTGCTGCCACCAGGCGTACTGGCCAAGCAGCACCATGCG
GGGGAAAGCAGCCAACAGGTACGTCAACGGGTGCTGGTGGCGCGCGAGCGGCAGCTGGCACGTGCAGGTAAAGTGAATGC
GCTGTTGAGTAACCGCGAGGTGGATCGGGATTGCCATTTACCTGCAGCGGAAGCGGAGTTTTTAGAAAGAACGCTGAGCC
AACTGGGATTATCGGTTCGAGCCTGGCATCGCATCCTGAAAGTGGCACGCACACTGGCCGATTTGACGGGGGAACAACAG
ATTGATAAACGCCATCTCAGCGAAGCGCTCAGCTATCGCAGTATGGATCGCCTGCTGCTGCAGTTACACCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

66.534

99.014

0.659
  comM Haemophilus influenzae Rd KW20

66.008

99.803

0.659
  comM Glaesserella parasuis strain SC1401

64.694

100

0.647
  comM Vibrio campbellii strain DS40M4

64.94

99.014

0.643
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.882

100

0.462

Multiple sequence alignment