Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACNS8M_RS12445 Genome accession   NZ_CP183239
Coordinates   2616978..2617688 (-) Length   236 a.a.
NCBI ID   WP_419224871.1    Uniprot ID   -
Organism   Acinetobacter sp. A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2611978..2622688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNS8M_RS12425 (ACNS8M_12360) aroB 2612573..2613652 (-) 1080 WP_168460758.1 3-dehydroquinate synthase -
  ACNS8M_RS12430 (ACNS8M_12365) aroK 2613672..2614214 (-) 543 WP_096901281.1 shikimate kinase AroK -
  ACNS8M_RS12435 (ACNS8M_12370) pilQ 2614252..2616393 (-) 2142 WP_419225342.1 type IV pilus secretin PilQ Machinery gene
  ACNS8M_RS12440 (ACNS8M_12375) pilP 2616454..2616978 (-) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  ACNS8M_RS12445 (ACNS8M_12380) comO 2616978..2617688 (-) 711 WP_419224871.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACNS8M_RS12450 (ACNS8M_12385) comN 2617685..2618320 (-) 636 WP_104852652.1 PilN domain-containing protein Machinery gene
  ACNS8M_RS12455 (ACNS8M_12390) pilM 2618320..2619378 (-) 1059 WP_194559041.1 pilus assembly protein PilM Machinery gene
  ACNS8M_RS12460 (ACNS8M_12395) ponA 2619548..2622106 (+) 2559 WP_419224872.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26589.16 Da        Isoelectric Point: 4.8636

>NTDB_id=1104755 ACNS8M_RS12445 WP_419224871.1 2616978..2617688(-) (comO) [Acinetobacter sp. A2]
MSLDEFDEVNQEAAVAPKKKMTVEKFFQQFNTLDPNNYGGWPLSVKITCWIFIIFLIAALGYFVVIKPKLDAIAAAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFVEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSVDTQTAANTAGGAK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1104755 ACNS8M_RS12445 WP_419224871.1 2616978..2617688(-) (comO) [Acinetobacter sp. A2]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGAAGCTGCTGTTGCTCCGAAAAAGAAAATGACCGTTGAGAAGTTTTT
TCAGCAGTTTAATACCCTTGATCCAAATAACTATGGTGGTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTCATTA
TTTTCTTAATTGCGGCACTAGGTTACTTTGTTGTAATTAAGCCGAAGTTAGATGCCATTGCTGCAGCGCATGCACAAGAA
CAGAATTTATTAAACGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAACAATATCAAGCGCAATTACAAGAAAT
GGAAGCTAACTTTAACCAGCAGCTTGAGCAATTGCCGAAAGAAACTGAAATTCCAGGCTTGGTTGAAGACATCAACGTTA
CAGGTGTTAATTCAGGCTTGAAGTTTAAAAACATTCGCTTAGAGAATGAGATCAAACAAGAGTTCTTTGTTGAACAGCCA
ATTTCGATTGAAGCAACAGGTGACTATCACGCTTTTGGTTCTTTTGTAAGTGGTACTGCAGCATTGCCGCGTATTGTGAC
TATGCATGATTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACAGATATTCCACAAGTGACATATAAAGCGCAAG
CGAAGACATATCGTTACGTGGGTAGTGTAGATACACAAACTGCGGCTAACACTGCTGGAGGGGCAAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

74.348

97.458

0.725
  pilO Acinetobacter baumannii D1279779

71.915

99.576

0.716

Multiple sequence alignment