Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACNS8M_RS12440 Genome accession   NZ_CP183239
Coordinates   2616454..2616978 (-) Length   174 a.a.
NCBI ID   WP_104852650.1    Uniprot ID   -
Organism   Acinetobacter sp. A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2611454..2621978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNS8M_RS12420 (ACNS8M_12355) - 2611709..2612563 (-) 855 WP_419224870.1 hypothetical protein -
  ACNS8M_RS12425 (ACNS8M_12360) aroB 2612573..2613652 (-) 1080 WP_168460758.1 3-dehydroquinate synthase -
  ACNS8M_RS12430 (ACNS8M_12365) aroK 2613672..2614214 (-) 543 WP_096901281.1 shikimate kinase AroK -
  ACNS8M_RS12435 (ACNS8M_12370) pilQ 2614252..2616393 (-) 2142 WP_419225342.1 type IV pilus secretin PilQ Machinery gene
  ACNS8M_RS12440 (ACNS8M_12375) pilP 2616454..2616978 (-) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  ACNS8M_RS12445 (ACNS8M_12380) comO 2616978..2617688 (-) 711 WP_419224871.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACNS8M_RS12450 (ACNS8M_12385) comN 2617685..2618320 (-) 636 WP_104852652.1 PilN domain-containing protein Machinery gene
  ACNS8M_RS12455 (ACNS8M_12390) pilM 2618320..2619378 (-) 1059 WP_194559041.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19153.36 Da        Isoelectric Point: 7.1660

>NTDB_id=1104754 ACNS8M_RS12440 WP_104852650.1 2616454..2616978(-) (pilP) [Acinetobacter sp. A2]
MKIEKLSLALLATVLMVGCDSRIDAVNAQMAEIRNQPPLPIEPAPVFEPAPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLARQLQPLENYALESLTMKGSMRQNGQILALIQTPDGEIERIQRGSYMGVNHGRVVNITPTQIDLIEIIPDGREGY
VERPRSLVLIGPAP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1104754 ACNS8M_RS12440 WP_104852650.1 2616454..2616978(-) (pilP) [Acinetobacter sp. A2]
ATGAAAATTGAAAAGCTTTCGTTGGCTCTACTGGCAACTGTGTTAATGGTGGGTTGTGATTCTCGTATTGATGCAGTCAA
TGCACAAATGGCTGAAATCCGTAATCAGCCACCATTACCGATTGAGCCCGCACCCGTGTTTGAGCCTGCGCCAACATTCA
ACTATGCAGCGCATCAGCTGAAAAGCCCATTTATGCCAAGTTCTTTGGCTGCTGAACTTAAAATTATGGCAGGGAAGCGT
GTTTATCCGAACCTTGCTCGCCAGTTACAACCACTGGAAAACTACGCACTTGAATCACTGACCATGAAAGGCAGTATGCG
TCAAAATGGTCAAATTTTGGCATTGATTCAAACACCAGATGGTGAAATTGAGCGTATCCAGCGTGGCAGTTATATGGGGG
TAAATCATGGTCGTGTGGTGAACATTACACCAACGCAAATTGATTTAATCGAGATTATTCCAGATGGTCGTGAAGGTTAT
GTAGAACGTCCAAGAAGTTTGGTTTTAATTGGGCCTGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.143

100

0.776
  comL Acinetobacter baylyi ADP1

71.839

100

0.718

Multiple sequence alignment