Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ACNS8M_RS12450 Genome accession   NZ_CP183239
Coordinates   2617685..2618320 (-) Length   211 a.a.
NCBI ID   WP_104852652.1    Uniprot ID   -
Organism   Acinetobacter sp. A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2612685..2623320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNS8M_RS12430 (ACNS8M_12365) aroK 2613672..2614214 (-) 543 WP_096901281.1 shikimate kinase AroK -
  ACNS8M_RS12435 (ACNS8M_12370) pilQ 2614252..2616393 (-) 2142 WP_419225342.1 type IV pilus secretin PilQ Machinery gene
  ACNS8M_RS12440 (ACNS8M_12375) pilP 2616454..2616978 (-) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  ACNS8M_RS12445 (ACNS8M_12380) comO 2616978..2617688 (-) 711 WP_419224871.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACNS8M_RS12450 (ACNS8M_12385) comN 2617685..2618320 (-) 636 WP_104852652.1 PilN domain-containing protein Machinery gene
  ACNS8M_RS12455 (ACNS8M_12390) pilM 2618320..2619378 (-) 1059 WP_194559041.1 pilus assembly protein PilM Machinery gene
  ACNS8M_RS12460 (ACNS8M_12395) ponA 2619548..2622106 (+) 2559 WP_419224872.1 penicillin-binding protein PBP1a -
  ACNS8M_RS12465 (ACNS8M_12400) - 2622213..2623016 (-) 804 WP_168418908.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23566.94 Da        Isoelectric Point: 6.4710

>NTDB_id=1104756 ACNS8M_RS12450 WP_104852652.1 2617685..2618320(-) (comN) [Acinetobacter sp. A2]
MAKINLLPWRDELREKRKKEFIVFCIAAAAVGVLAVALAWFFYNAKLADQEQANQLVISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPIAVRLVDELVRVTPSNMYLTKVTRTGNKFTFEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
KEENKDKAPSSVVPRVEESYGTFVVTSDLEEIAIPVTATDPNSTSAAGAAQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1104756 ACNS8M_RS12450 WP_104852652.1 2617685..2618320(-) (comN) [Acinetobacter sp. A2]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAGAAAAACGTAAAAAAGAATTTATTGTATTTTGTATTGC
AGCAGCTGCTGTAGGGGTGTTGGCCGTCGCATTGGCATGGTTTTTCTACAATGCAAAATTGGCAGATCAAGAACAAGCCA
ATCAATTGGTCATCAGTACCAACCAAAACCTAGATGTACAATTAAAATCTTTGGAAGGCTTACAAGAACAGCGTAATGCA
ATTGTAGAGCGTATGAAGCTGATTCAGGGCTTACAAAGCCAACGTCCAATTGCAGTACGTTTGGTGGATGAGCTTGTGCG
TGTGACACCAAGCAATATGTATTTGACCAAAGTGACGCGTACTGGCAATAAATTTACCTTTGAAGGCAAGGCAGAAAGTC
CAAATACGGTTGCAGAATTCTTACGTAATTTGGAAGCATCGCCGTGGTATCGCAATGCATTTATGAATTCATTCTTAGCC
AAAGAAGAAAATAAAGATAAAGCACCAAGTTCTGTAGTTCCTCGTGTTGAGGAAAGTTATGGCACATTTGTGGTGACTTC
TGATTTAGAAGAAATCGCAATTCCAGTGACCGCTACAGATCCTAATTCAACATCAGCAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

71.77

99.052

0.711
  pilN Acinetobacter baumannii D1279779

69.484

100

0.701

Multiple sequence alignment