Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACNQFN_RS02305 Genome accession   NZ_CP183038
Coordinates   472696..474195 (+) Length   499 a.a.
NCBI ID   WP_418647824.1    Uniprot ID   -
Organism   Thauera butanivorans strain TB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 467696..479195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNQFN_RS02270 (ACNQFN_02270) - 468019..468411 (-) 393 WP_418647822.1 helix-turn-helix domain-containing protein -
  ACNQFN_RS02275 (ACNQFN_02275) - 468414..468716 (-) 303 WP_068639113.1 type II toxin-antitoxin system HigB family toxin -
  ACNQFN_RS02280 (ACNQFN_02280) cmr1 468795..469328 (-) 534 WP_418647823.1 type III-B CRISPR module RAMP protein Cmr1 -
  ACNQFN_RS02285 (ACNQFN_02285) - 469664..470962 (-) 1299 WP_088178904.1 ammonium transporter -
  ACNQFN_RS02290 (ACNQFN_02290) glnK 470977..471315 (-) 339 WP_068639083.1 P-II family nitrogen regulator -
  ACNQFN_RS02295 (ACNQFN_02295) - 471346..472068 (-) 723 WP_068639081.1 TorF family putative porin -
  ACNQFN_RS02300 (ACNQFN_02300) - 472338..472595 (+) 258 WP_068639079.1 accessory factor UbiK family protein -
  ACNQFN_RS02305 (ACNQFN_02305) comM 472696..474195 (+) 1500 WP_418647824.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACNQFN_RS02310 (ACNQFN_02310) - 474215..474607 (-) 393 WP_068639075.1 rhodanese-like domain-containing protein -
  ACNQFN_RS02315 (ACNQFN_02315) - 474796..475530 (-) 735 WP_068639073.1 ABC transporter ATP-binding protein -
  ACNQFN_RS02320 (ACNQFN_02320) - 475520..476293 (-) 774 WP_068639071.1 ABC transporter ATP-binding protein -
  ACNQFN_RS02325 (ACNQFN_02325) - 476290..477387 (-) 1098 WP_068639069.1 ABC transporter permease subunit -
  ACNQFN_RS02330 (ACNQFN_02330) - 477403..478335 (-) 933 WP_068639067.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52847.61 Da        Isoelectric Point: 8.1937

>NTDB_id=1103727 ACNQFN_RS02305 WP_418647824.1 472696..474195(+) (comM) [Thauera butanivorans strain TB]
MSLALVRSRALDGLDAPEVTVEVHLANGLPAFSLVGLPDTEVREARDRVRAALQTSQFEFPQRRITVNLAPADLPKEGGR
FDLAIAVGILVASGQVSAKLLDDLEFCGELSLNGELRAVRGVLAVALAAGRGGRALVVAPANAAEAALARETTVLPAGSL
CAVAAHLNGHTALVPQPCSSVPSQSACGPDLADVRGQLQARRALEVAAAGAHALLLFGPPGTGKSMLAQRLPGLLPPMSE
AEALETAAVSSLEGRFDAARWAQRPMRAPHHSASAAALVGGGATPRPGEISLAHNGVLYLDELPEFDRRVLESLREPLEN
GCISVSRARRRAEFPARFQLVAAMNPCPCGFLGHPRKACRCTPEQIARYRGRLSGPLLDRIDLVVEVPVLEHEELASAVP
GPSSTEVRARVEQARAVQIERQGVVNARLDSRGVERFCMPDQGGGALLKQAMNRLDFSARAYHRVLRVARTLADMAGAAQ
PGAAQMAEAIQYRRSLDGR

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1103727 ACNQFN_RS02305 WP_418647824.1 472696..474195(+) (comM) [Thauera butanivorans strain TB]
ATGTCTCTCGCGCTCGTGCGCAGCCGCGCGCTCGACGGCCTCGATGCACCCGAGGTCACGGTCGAGGTGCATCTGGCCAA
TGGCCTGCCTGCCTTCAGCCTCGTCGGCTTGCCCGATACCGAAGTGCGCGAGGCGCGCGACCGCGTGCGCGCCGCCTTGC
AGACTTCGCAGTTCGAGTTCCCCCAGCGGCGGATCACCGTCAATCTGGCGCCGGCCGATCTGCCCAAGGAAGGCGGCCGC
TTCGACCTGGCGATCGCGGTGGGCATCCTCGTCGCCTCCGGCCAGGTGTCCGCCAAGCTGCTCGACGATCTGGAGTTCTG
CGGCGAGCTGTCGCTGAACGGCGAGCTGCGCGCGGTGCGCGGCGTACTGGCGGTTGCGCTGGCGGCCGGCCGTGGAGGGC
GCGCGCTGGTGGTGGCGCCGGCCAACGCGGCGGAAGCGGCGCTGGCCCGGGAGACGACGGTGCTGCCGGCGGGCAGTCTG
TGCGCGGTGGCGGCTCATCTGAACGGCCATACCGCGCTGGTGCCGCAGCCGTGCAGCAGCGTGCCGTCACAGTCTGCCTG
CGGGCCGGACCTGGCCGACGTGCGCGGCCAGCTGCAGGCGCGCCGCGCGCTGGAGGTGGCCGCAGCCGGCGCCCATGCGC
TGCTGCTATTCGGGCCGCCGGGCACCGGCAAGTCGATGCTGGCACAGCGCCTGCCCGGCCTGCTGCCGCCGATGTCCGAG
GCCGAGGCGCTGGAAACGGCGGCGGTGAGTTCGCTGGAGGGCCGCTTCGATGCCGCGCGCTGGGCGCAGCGGCCGATGCG
CGCACCGCATCATTCCGCTTCGGCGGCGGCGCTGGTCGGTGGTGGCGCAACGCCGCGTCCAGGCGAGATTTCCCTCGCCC
ACAATGGCGTTTTGTACCTGGACGAACTGCCCGAGTTCGACCGCCGCGTGCTCGAATCCCTGCGAGAGCCGCTGGAGAAC
GGCTGCATCAGCGTATCGCGGGCGCGGCGGCGGGCGGAGTTCCCTGCGCGCTTCCAGCTGGTGGCGGCGATGAATCCCTG
TCCCTGCGGCTTTCTGGGCCATCCGCGCAAGGCCTGCCGATGCACGCCGGAGCAGATCGCACGCTACCGCGGGCGCCTGT
CGGGGCCGCTGCTCGACCGCATCGACCTGGTGGTGGAAGTGCCGGTGCTGGAGCACGAGGAACTCGCCTCGGCTGTGCCC
GGGCCATCGTCGACGGAAGTGCGGGCGCGGGTCGAGCAGGCGAGGGCGGTGCAGATCGAGCGCCAGGGCGTGGTCAATGC
CCGCCTCGACAGCCGCGGCGTGGAGCGTTTCTGCATGCCGGACCAGGGCGGTGGGGCCTTGCTGAAGCAGGCGATGAACA
GGCTGGACTTTTCCGCGCGGGCCTACCACCGCGTCCTGCGCGTGGCGCGCACGCTGGCGGACATGGCAGGCGCCGCACAG
CCCGGCGCGGCGCAGATGGCCGAGGCGATCCAGTATCGCCGCAGTCTGGACGGGCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.343

99.198

0.539
  comM Vibrio campbellii strain DS40M4

53.939

99.198

0.535
  comM Haemophilus influenzae Rd KW20

52.894

100

0.531
  comM Glaesserella parasuis strain SC1401

50.199

100

0.505
  comM Legionella pneumophila str. Paris

48.297

100

0.483
  comM Legionella pneumophila strain ERS1305867

48.297

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.439

Multiple sequence alignment