Detailed information NTG1103449

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: ACNSPL_RS29255
• Genome accession: NZ_CP183002
• Coordinates: 5902657..5903070 (-)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain RKI 380DKa
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5897657..5908070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNSPL_RS29225 (ACNSPL_29210)	-	5898950..5899156 (-)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
ACNSPL_RS29230 (ACNSPL_29215)	-	5899308..5900501 (-)	1194	WP_000047534.1	acetate kinase	-
ACNSPL_RS29235 (ACNSPL_29220)	comYH	5900533..5901507 (-)	975	WP_001008574.1	class I SAM-dependent methyltransferase	Machinery gene
ACNSPL_RS29240 (ACNSPL_29225)	comGG	5901622..5901993 (-)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
ACNSPL_RS29245 (ACNSPL_29230)	comGF	5901971..5902480 (-)	510	WP_418287328.1	competence type IV pilus minor pilin ComGF	-
ACNSPL_RS29250 (ACNSPL_29235)	comGE	5902386..5902685 (-)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
ACNSPL_RS29255 (ACNSPL_29240)	comYD	5902657..5903070 (-)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACNSPL_RS29260 (ACNSPL_29245)	comYC	5903045..5903314 (-)	270	WP_000962019.1	competence type IV pilus major pilin ComGC	Machinery gene
ACNSPL_RS29265 (ACNSPL_29250)	prx	5903335..5903523 (-)	189	WP_000965190.1	hypothetical protein	Regulator
ACNSPL_RS29270 (ACNSPL_29255)	-	5903776..5905119 (-)	1344	WP_000257229.1	GH25 family lysozyme	-
ACNSPL_RS29275 (ACNSPL_29260)	-	5905249..5905500 (-)	252	WP_000611525.1	phage holin	-
ACNSPL_RS29280 (ACNSPL_29265)	-	5905502..5905804 (-)	303	WP_000215499.1	hypothetical protein	-
ACNSPL_RS29285 (ACNSPL_29270)	-	5905817..5905975 (-)	159	WP_418287329.1	CD1375 family protein	-
ACNSPL_RS29290 (ACNSPL_29275)	-	5906004..5906333 (-)	330	WP_000494205.1	DUF1366 domain-containing protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=1103449 ACNSPL_RS29255 WP_000244261.1 5902657..5903070(-) (comYD) [Klebsiella pneumoniae strain RKI 380DKa]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=1103449 ACNSPL_RS29255 WP_000244261.1 5902657..5903070(-) (comYD) [Klebsiella pneumoniae strain RKI 380DKa]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394