Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNH6H_RS09750 Genome accession   NZ_CP182947
Coordinates   2181119..2181652 (-) Length   177 a.a.
NCBI ID   WP_418317306.1    Uniprot ID   -
Organism   Piscinibacter sakaiensis strain 201-F6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2176119..2186652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNH6H_RS09725 (ACNH6H_09725) - 2176703..2177233 (+) 531 WP_418317301.1 NUDIX hydrolase -
  ACNH6H_RS09730 (ACNH6H_09730) mnmA 2177230..2178396 (+) 1167 WP_418317302.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACNH6H_RS09735 (ACNH6H_09735) - 2178374..2179009 (+) 636 WP_418317303.1 FMN-binding negative transcriptional regulator -
  ACNH6H_RS09740 (ACNH6H_09740) - 2179002..2179760 (+) 759 WP_418317304.1 c-type cytochrome -
  ACNH6H_RS09745 (ACNH6H_09745) - 2179757..2181103 (+) 1347 WP_418317305.1 c-type cytochrome -
  ACNH6H_RS09750 (ACNH6H_09750) ssb 2181119..2181652 (-) 534 WP_418317306.1 single-stranded DNA-binding protein Machinery gene
  ACNH6H_RS09755 (ACNH6H_09755) - 2181802..2182200 (-) 399 WP_418317307.1 BLUF domain-containing protein -
  ACNH6H_RS09760 (ACNH6H_09760) - 2182365..2184293 (+) 1929 WP_418317308.1 EAL domain-containing protein -
  ACNH6H_RS09765 (ACNH6H_09765) - 2184318..2186300 (-) 1983 WP_418317309.1 protein kinase domain-containing protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19137.92 Da        Isoelectric Point: 5.8514

>NTDB_id=1103406 ACNH6H_RS09750 WP_418317306.1 2181119..2181652(-) (ssb) [Piscinibacter sakaiensis strain 201-F6]
MASINKVILIGNLGRDPEVRYTANGNAVCNISVATTRNWKDKSSGDKVEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWQDKEGKDNYTTEVIAENMQLLGGREGGGGGDDGGSYSRGGGRGGSGDDDHRGEPQQRSAPSARPAPSRPQAKS
GGGSSTGFDDMDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1103406 ACNH6H_RS09750 WP_418317306.1 2181119..2181652(-) (ssb) [Piscinibacter sakaiensis strain 201-F6]
ATGGCCTCGATCAACAAAGTCATCCTCATCGGCAACCTGGGTCGCGACCCGGAAGTCCGCTATACCGCCAACGGCAATGC
CGTGTGCAACATCAGCGTCGCGACGACGCGCAACTGGAAGGACAAATCCAGCGGCGACAAGGTCGAGGAGACCGAATGGC
ACCGCGTCGTCTTCTACGACCGGCTGGCCGAGATCGCCGGTGAATACCTGAAGAAGGGTCGGCCGGTTTATGTCGAAGGC
CGGCTGAAGACGCGCAAGTGGCAGGACAAGGAAGGCAAGGACAACTACACCACCGAGGTGATCGCCGAAAACATGCAGCT
GCTCGGCGGCCGCGAGGGCGGCGGTGGCGGTGACGACGGCGGCTCCTACTCGCGTGGCGGTGGCCGTGGCGGTTCCGGTG
ACGATGACCATCGCGGCGAGCCGCAGCAGCGCAGCGCGCCATCGGCACGCCCGGCGCCGAGCCGGCCGCAGGCGAAGTCC
GGGGGCGGCTCGTCGACCGGTTTCGACGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.849

100

0.503
  ssb Neisseria meningitidis MC58

46.961

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.961

100

0.48
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.463

Multiple sequence alignment