Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACNH6B_RS17140 Genome accession   NZ_CP182944
Coordinates   3994570..3996093 (+) Length   507 a.a.
NCBI ID   WP_418357611.1    Uniprot ID   -
Organism   Shewanella basaltis strain KCTC 22121     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3989570..4001093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNH6B_RS17125 (ACNH6B_17125) ilvC 3990255..3991736 (-) 1482 WP_248969127.1 ketol-acid reductoisomerase -
  ACNH6B_RS17130 (ACNH6B_17130) ilvY 3991926..3992798 (+) 873 WP_418359024.1 HTH-type transcriptional activator IlvY -
  ACNH6B_RS17135 (ACNH6B_17135) - 3992810..3994117 (-) 1308 WP_418357610.1 hemolysin family protein -
  ACNH6B_RS17140 (ACNH6B_17140) comM 3994570..3996093 (+) 1524 WP_418357611.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACNH6B_RS17145 (ACNH6B_17145) - 3996174..3997070 (+) 897 WP_418357612.1 acyltransferase -
  ACNH6B_RS17150 (ACNH6B_17150) - 3997077..3998012 (+) 936 WP_418357613.1 acyltransferase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55364.52 Da        Isoelectric Point: 7.7537

>NTDB_id=1103399 ACNH6B_RS17140 WP_418357611.1 3994570..3996093(+) (comM) [Shewanella basaltis strain KCTC 22121]
MAIACVFTRASCGVEAPKVTVEVHLSNGLPAFNLVGLPEASVKEAKERVRSALINAGFEFPQRRITVNLAPADLPKQGGR
YDLPIAIGILAASNQVPSKALNQCEFVGELALSGQVRPCTGLLPAIIAARNDQHHFFMPIENRHEAELVGYNHSYFVAHL
QNLAAFLHGQAQLPLLDTQPEWIDESPASDNVLCMSDVIGQYQAKQGLEIAAAGNHNMLFLGPPGTGKSMLANRIIPLLP
PLTYDEAIEVAAIHSVAGLHIKPQDFLNRPFRSPHHTCSSIALIGGGSHPKPGEISLAHRGILFLDEIAEFPRKVLDCLR
EPLETGQVEISRAAAKLTFSSRFQLIAAMNPSPCGDTERARSTPEQIQRYLSRLSGPFLDRFDLTVEVPKLPAGTLTQKH
QPGETSAEIAKRVKLARESQLARAGVLNSELSPKQLKQDSQISQQDLAFLEQSVVSLGLSVRSFHRIQRVSRTIADLQQS
VTIERSHIAQALGYRAMDRLLAKLNQQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1103399 ACNH6B_RS17140 WP_418357611.1 3994570..3996093(+) (comM) [Shewanella basaltis strain KCTC 22121]
ATGGCGATAGCCTGTGTTTTTACAAGAGCAAGTTGTGGTGTTGAGGCACCTAAAGTCACGGTAGAGGTGCATTTAAGCAA
TGGTTTACCCGCATTTAATTTAGTCGGTTTACCAGAAGCCTCGGTTAAAGAAGCAAAAGAGCGCGTCAGAAGCGCCTTAA
TTAATGCTGGATTTGAGTTTCCTCAGCGGCGCATTACCGTCAACCTTGCGCCAGCTGACCTACCTAAACAGGGCGGGCGA
TATGACTTGCCCATCGCCATTGGTATTTTAGCGGCATCAAATCAAGTCCCCAGTAAAGCCCTGAACCAATGTGAATTTGT
TGGGGAGCTTGCATTATCAGGACAAGTGAGACCCTGTACAGGCTTACTGCCAGCCATTATTGCAGCACGCAATGATCAGC
ATCATTTTTTTATGCCAATAGAAAATCGCCACGAGGCAGAGCTTGTGGGGTACAACCACAGCTATTTTGTGGCTCATTTG
CAAAATCTTGCCGCATTTTTACATGGCCAGGCACAATTACCTTTACTCGACACACAGCCAGAATGGATAGACGAATCACC
CGCCAGCGACAATGTATTATGCATGAGTGATGTGATTGGCCAATATCAAGCTAAACAAGGACTCGAAATCGCTGCTGCAG
GAAATCACAACATGCTTTTTCTGGGCCCTCCCGGTACCGGTAAAAGTATGTTAGCGAATCGAATTATTCCCTTGTTACCG
CCATTAACTTATGACGAAGCTATCGAAGTGGCCGCCATCCACTCCGTTGCAGGCTTACACATCAAACCGCAAGATTTTCT
AAATCGCCCCTTTCGCTCGCCGCACCATACTTGTTCATCAATTGCATTAATTGGCGGGGGCAGCCATCCCAAACCAGGCG
AAATATCGCTTGCGCATCGTGGAATATTATTTTTAGATGAAATAGCTGAATTTCCACGCAAAGTACTCGACTGCTTGCGT
GAACCTTTAGAAACCGGCCAGGTTGAGATATCGCGCGCTGCAGCAAAACTCACTTTTTCAAGCCGCTTCCAATTAATCGC
CGCGATGAACCCTAGCCCCTGCGGCGATACAGAACGAGCACGCTCAACACCTGAGCAAATTCAACGCTATTTATCCCGCC
TTTCGGGGCCATTTTTAGACCGATTTGACTTAACCGTTGAAGTGCCTAAATTACCCGCTGGCACACTCACGCAAAAACAC
CAACCCGGCGAAACCAGCGCTGAAATAGCCAAACGAGTGAAACTGGCACGTGAAAGCCAACTAGCTCGTGCCGGTGTATT
AAATAGTGAGCTAAGCCCGAAACAACTCAAACAAGACAGCCAAATCAGTCAACAAGACTTAGCGTTTCTAGAACAAAGTG
TCGTCAGTTTAGGTTTGTCGGTGCGAAGTTTTCATCGTATTCAACGAGTATCACGCACCATTGCAGATCTGCAACAATCG
GTCACCATTGAACGCAGCCACATTGCACAAGCACTTGGTTATCGAGCAATGGATCGTTTACTTGCCAAGCTTAACCAACA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.882

100

0.562
  comM Vibrio cholerae strain A1552

54.42

100

0.546
  comM Vibrio campbellii strain DS40M4

54.028

100

0.542
  comM Glaesserella parasuis strain SC1401

53.922

100

0.542
  comM Legionella pneumophila str. Paris

46

98.619

0.454
  comM Legionella pneumophila strain ERS1305867

46

98.619

0.454
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.137

100

0.434

Multiple sequence alignment