Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q9285_RS23125 Genome accession   NZ_CP182542
Coordinates   4894778..4896298 (-) Length   506 a.a.
NCBI ID   WP_011257184.1    Uniprot ID   A0A854CKZ6
Organism   Xanthomonas oryzae pv. oryzae strain A46     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4886911..4894621 4894778..4896298 flank 157


Gene organization within MGE regions


Location: 4886911..4896298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9285_RS23085 (Q9285_23080) - 4886911..4887738 (-) 828 Protein_4413 IS3 family transposase -
  Q9285_RS23090 (Q9285_23085) - 4887827..4888015 (+) 189 Protein_4414 transposase -
  Q9285_RS23095 (Q9285_23090) - 4888104..4889070 (+) 967 Protein_4415 IS1595-like element ISXo5 family transposase -
  Q9285_RS23100 (Q9285_23095) - 4889077..4890078 (+) 1002 Protein_4416 IS256-like element IS1113 family transposase -
  Q9285_RS23105 (Q9285_23100) - 4890108..4890557 (-) 450 Protein_4417 IS1595-like element ISXo5 family transposase -
  Q9285_RS23110 (Q9285_23105) - 4890646..4891692 (+) 1047 Protein_4418 IS5-like element ISXoo5 family transposase -
  Q9285_RS23115 (Q9285_23110) - 4891831..4893207 (+) 1377 Protein_4419 IS5 family transposase -
  Q9285_RS23120 (Q9285_23115) - 4893302..4894621 (+) 1320 WP_011407278.1 IS701-like element ISXo15 family transposase -
  Q9285_RS23125 (Q9285_23120) comM 4894778..4896298 (-) 1521 WP_011257184.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54090.89 Da        Isoelectric Point: 8.2767

>NTDB_id=1102219 Q9285_RS23125 WP_011257184.1 4894778..4896298(-) (comM) [Xanthomonas oryzae pv. oryzae strain A46]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALGDYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAEHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLHDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1102219 Q9285_RS23125 WP_011257184.1 4894778..4896298(-) (comM) [Xanthomonas oryzae pv. oryzae strain A46]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TTTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGGCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGAGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCCGCCGAATTGGCGGTGCAGGCGCTCGGGGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCATCCGCGCCCCGGCGAAATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAACCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCCTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGCAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCACGCTCGATGCATCGCATACTGCGCGTGGCACGCACCATCGCCGATCTCCACGACAGCGCA
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854CKZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Glaesserella parasuis strain SC1401

54.241

100

0.543
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.71

98.221

0.508
  comM Legionella pneumophila strain ERS1305867

51.71

98.221

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.462

Multiple sequence alignment