Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACM1ZW_RS07910 Genome accession   NZ_CP182230
Coordinates   1701138..1702631 (+) Length   497 a.a.
NCBI ID   WP_416740385.1    Uniprot ID   -
Organism   Pseudomonas sp. NFX71     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1696138..1707631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1ZW_RS07880 (ACM1ZW_07880) sutA 1696472..1696792 (-) 321 WP_017341446.1 transcriptional regulator SutA -
  ACM1ZW_RS07885 (ACM1ZW_07885) - 1696894..1697319 (-) 426 WP_017341447.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACM1ZW_RS07890 (ACM1ZW_07890) - 1697533..1698870 (-) 1338 WP_017341448.1 ammonium transporter -
  ACM1ZW_RS07895 (ACM1ZW_07895) glnK 1698906..1699244 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACM1ZW_RS07900 (ACM1ZW_07900) - 1699662..1699922 (+) 261 WP_017341449.1 accessory factor UbiK family protein -
  ACM1ZW_RS07905 (ACM1ZW_07905) - 1700343..1700867 (+) 525 WP_416740384.1 Bro-N domain-containing protein -
  ACM1ZW_RS07910 (ACM1ZW_07910) comM 1701138..1702631 (+) 1494 WP_416740385.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACM1ZW_RS07915 (ACM1ZW_07915) - 1702636..1703850 (-) 1215 WP_416740386.1 aldose 1-epimerase family protein -
  ACM1ZW_RS07920 (ACM1ZW_07920) - 1704099..1706075 (-) 1977 WP_017341453.1 methyl-accepting chemotaxis protein -
  ACM1ZW_RS07925 (ACM1ZW_07925) - 1706257..1707177 (-) 921 WP_017341454.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53252.47 Da        Isoelectric Point: 8.0570

>NTDB_id=1100912 ACM1ZW_RS07910 WP_416740385.1 1701138..1702631(+) (comM) [Pseudomonas sp. NFX71]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPYVSNGLLYASKPYPDLNEVQGQLSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVTSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREAAALNPAIKP
GDDTLTAAVLVADARERQHKRQGCANAFLDLPGLRMHCKLSTTDETWLETACERLTLSLRSAHRLLKVARTLADLEHVDR
ITREHLAEALQYRPTTH

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1100912 ACM1ZW_RS07910 WP_416740385.1 1701138..1702631(+) (comM) [Pseudomonas sp. NFX71]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCGCCCGCCGTCACCGTCGAAGTTCATCTGGCTAA
CGGTTTGCCATCACTGACCATGGTCGGTCTGCCCGAAGCAGCAGTGAAGGAAAGCAAGGATCGAGTACGTAGCGCGATCA
TCAATTCAGGCCTGCAGTTTCCGGCACGGCGCATCACGTTGAATCTGGCGCCTGCGGATTTGCCCAAGGACGGCGGGCGG
TTCGATCTGGCGATTGCCTTGGGGATTCTGTCGGCCAGCGTGCAGGTGCCGACGTTGACGCTGGACGATGTGGAATGCCT
GGGGGAGCTGGCACTGTCCGGCGCGGTGCGTGCGGTGAGAGGTGTGTTGCCGGCGGCACTGGCGGCGCGCAAGGCTGGAC
GCTCGTTGATGGTGCCTCGGGCGAATGCCGAGGAAGCCTGCCTGGCGTCGGGGCTGAAAGTCATTGCGGTGGATCATTTG
CTGGAGGCGGTCGCGCATTTCAACGGTCACACACCCGTCGAGCCTTACGTCTCCAACGGTCTGCTCTACGCCAGCAAACC
CTACCCCGACTTGAATGAAGTGCAAGGCCAACTCTCAGCCAAGCGCGCTTTGCTGATTGCAGCGGCCGGGGCTCATAACC
TGCTGTTCAGCGGCCCGCCGGGGACCGGGAAAACGCTGTTGGCAAGTCGGTTGCCGGGGCTGTTGCCGCCATTGGCGGAA
AACGAGGCGCTGGAGGTCGCAGCCATTCAATCAGTCACCAGTTGCGTCCCTTTAAGTCACTGGCCACAGCGACCGTTCCG
CCAGCCCCATCACTCAGCCTCCGGACCGGCGCTGGTGGGCGGTGGTTCGAAACCACAACCCGGCGAGATCACCCTCGCCC
ACCATGGCGTACTGTTCCTCGACGAACTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTTTTGAGAGAACCGCTGGAATCC
GGGCATATCGTGATTTCCCGGGCGAAGGATCGCGTGCGGTTTCCCGCACGCTTTCAATTGGTGGCCGCGATGAATCCGTG
CCCCTGTGGATATCTCGGCGAGCCGAGTGGTCGCTGTTCCTGCACGCCTGACATGGTTCAACGCTACCGCAACAAACTCT
CCGGGCCGCTGCTGGATCGGATCGATCTGCACTTGACGGTCGCCCGTGAGGCCGCGGCTTTGAATCCCGCAATCAAACCC
GGTGACGACACCCTGACCGCCGCCGTTCTGGTTGCCGACGCAAGGGAGCGGCAACACAAACGCCAGGGTTGCGCCAACGC
GTTCCTTGATCTGCCGGGCTTGCGCATGCATTGCAAGTTATCCACAACCGACGAAACCTGGCTGGAAACAGCGTGTGAAC
GGCTGACCTTGTCGCTGAGGTCAGCCCATCGATTGCTCAAGGTTGCGCGCACCCTGGCGGATCTTGAACACGTCGATCGC
ATCACCCGTGAACATCTGGCTGAAGCGTTGCAGTACCGGCCAACCACCCACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Haemophilus influenzae Rd KW20

52.906

100

0.531
  comM Legionella pneumophila str. Paris

50.598

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.598

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.2

100

0.455

Multiple sequence alignment