Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNFWN_RS05045 Genome accession   NZ_CP181387
Coordinates   1057950..1058450 (+) Length   166 a.a.
NCBI ID   WP_132649591.1    Uniprot ID   A0A4R2LWC2
Organism   Rubrivivax gelatinosus isolate AJ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1052950..1063450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFWN_RS05040 recQ 1055848..1057761 (-) 1914 WP_132649592.1 DNA helicase RecQ -
  ACNFWN_RS05045 ssb 1057950..1058450 (+) 501 WP_132649591.1 single-stranded DNA-binding protein Machinery gene
  ACNFWN_RS05050 - 1058525..1059091 (+) 567 WP_132649590.1 NUDIX hydrolase -
  ACNFWN_RS05055 - 1059120..1059509 (+) 390 WP_207184650.1 hypothetical protein -
  ACNFWN_RS05060 - 1059601..1060674 (+) 1074 WP_132649589.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18043.21 Da        Isoelectric Point: 5.9824

>NTDB_id=1099934 ACNFWN_RS05045 WP_132649591.1 1057950..1058450(+) (ssb) [Rubrivivax gelatinosus isolate AJ1]
MASVNKVILVGNLGRDPEVRYAPSGSAICNVTIATSRQWKDKTSGERQEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWTDKDGVEKYTTEIIAMEMQLLGGREGGGGGGGDYGGGDDMGAAPARRAPAPRPQAPAPRAPAPQKSSTGFDDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1099934 ACNFWN_RS05045 WP_132649591.1 1057950..1058450(+) (ssb) [Rubrivivax gelatinosus isolate AJ1]
ATGGCCTCGGTCAACAAAGTCATCCTCGTCGGCAACCTCGGCCGCGACCCCGAAGTGCGCTACGCCCCCAGCGGCTCGGC
GATCTGCAACGTCACCATCGCCACCAGCCGCCAGTGGAAGGACAAGACCAGCGGCGAGCGCCAGGAAGAGACCGAATGGC
ACCGCGTGGTCTTCTACGACCGCCTGGCCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGCCCGGTCTACGTCGAAGGC
CGCCTGAAGACCCGCAAGTGGACCGACAAGGACGGCGTCGAGAAGTACACCACCGAGATCATCGCCATGGAAATGCAGCT
GCTCGGCGGCCGTGAAGGCGGCGGCGGTGGCGGCGGCGACTACGGCGGTGGCGACGACATGGGCGCCGCGCCGGCCCGCC
GCGCCCCGGCCCCGCGCCCGCAGGCCCCCGCGCCGCGCGCCCCGGCGCCGCAGAAGTCGAGCACCGGCTTCGACGACATG
GACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R2LWC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.099

100

0.56
  ssb Glaesserella parasuis strain SC1401

47.34

100

0.536
  ssb Neisseria gonorrhoeae MS11

50.575

100

0.53
  ssb Neisseria meningitidis MC58

48.851

100

0.512

Multiple sequence alignment