Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | ACNFWO_RS03780 | Genome accession | NZ_CP181386 |
| Coordinates | 815837..817558 (-) | Length | 573 a.a. |
| NCBI ID | WP_132648665.1 | Uniprot ID | - |
| Organism | Rubrivivax gelatinosus isolate YF6 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 810837..822558
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACNFWO_RS03755 | - | 812020..812220 (-) | 201 | WP_132648670.1 | DNA gyrase inhibitor YacG | - |
| ACNFWO_RS03760 | zapD | 812243..812998 (-) | 756 | WP_132648669.1 | cell division protein ZapD | - |
| ACNFWO_RS03765 | coaE | 813026..813652 (-) | 627 | WP_132648668.1 | dephospho-CoA kinase | - |
| ACNFWO_RS03770 | - | 813634..814584 (-) | 951 | WP_132648667.1 | prepilin peptidase | - |
| ACNFWO_RS03775 | pilC | 814581..815813 (-) | 1233 | WP_416461614.1 | type II secretion system F family protein | Machinery gene |
| ACNFWO_RS03780 | pilB | 815837..817558 (-) | 1722 | WP_132648665.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACNFWO_RS03785 | chrA | 817665..818882 (-) | 1218 | WP_132648664.1 | chromate efflux transporter | - |
| ACNFWO_RS03790 | - | 818882..819892 (-) | 1011 | WP_132648663.1 | sulfotransferase family protein | - |
| ACNFWO_RS03795 | - | 819978..821525 (-) | 1548 | WP_132648662.1 | methyl-accepting chemotaxis protein | - |
| ACNFWO_RS03800 | - | 821590..822141 (-) | 552 | WP_132648661.1 | cache domain-containing protein | - |
Sequence
Protein
Download Length: 573 a.a. Molecular weight: 62559.80 Da Isoelectric Point: 5.6611
>NTDB_id=1099917 ACNFWO_RS03780 WP_132648665.1 815837..817558(-) (pilB) [Rubrivivax gelatinosus isolate YF6]
MAADTTVETQQTALSGVARVLVHAGKLNARTAEDLARSARERKTSFVSAVVAAGALKPDELAHALSGALALPLLDLNAVD
LQKLPRNLLDARTAAQYQVIVLGKRGNRLFIGAADPTDQEAVERIKFATQLTPEWVIVEYDKLMRQLDAQGQSANEVLES
LAGEDFDFDVSDDTTTTAEAEVSTEVEDAPVVRFLQKMLIDAINARASDLHFEPYEYNYRVRFRIDGELREITQPPIAIK
DKLASRIKVISRMDIAEKRVPQDGRMKLKFGSKAIDFRVSTLPTLFGEKVVIRILDPSSAKLGIEALGYEKVEKDRLLAA
IQRPYGMILVTGPTGSGKTVSLYTCLNILNQPGVNIATVEDPAEINLPGINQVNVNDKAGLTFAAALKAFLRQDPDIIMV
GEIRDLETADIAIKAAQTGHLVMSTLHTNDAPTTLTRLLNMGVAPFNIAASVLLITAQRLARRLCEVCKKPAEYPREALL
KAGYTDADLDGSWKPYRAVGCSACNNGYKGRVGIYQVMPITESIQRVILSEGTALDIAEQAKREGVRDLRQSGLVKVRQG
VTSLEEVITVTNE
MAADTTVETQQTALSGVARVLVHAGKLNARTAEDLARSARERKTSFVSAVVAAGALKPDELAHALSGALALPLLDLNAVD
LQKLPRNLLDARTAAQYQVIVLGKRGNRLFIGAADPTDQEAVERIKFATQLTPEWVIVEYDKLMRQLDAQGQSANEVLES
LAGEDFDFDVSDDTTTTAEAEVSTEVEDAPVVRFLQKMLIDAINARASDLHFEPYEYNYRVRFRIDGELREITQPPIAIK
DKLASRIKVISRMDIAEKRVPQDGRMKLKFGSKAIDFRVSTLPTLFGEKVVIRILDPSSAKLGIEALGYEKVEKDRLLAA
IQRPYGMILVTGPTGSGKTVSLYTCLNILNQPGVNIATVEDPAEINLPGINQVNVNDKAGLTFAAALKAFLRQDPDIIMV
GEIRDLETADIAIKAAQTGHLVMSTLHTNDAPTTLTRLLNMGVAPFNIAASVLLITAQRLARRLCEVCKKPAEYPREALL
KAGYTDADLDGSWKPYRAVGCSACNNGYKGRVGIYQVMPITESIQRVILSEGTALDIAEQAKREGVRDLRQSGLVKVRQG
VTSLEEVITVTNE
Nucleotide
Download Length: 1722 bp
>NTDB_id=1099917 ACNFWO_RS03780 WP_132648665.1 815837..817558(-) (pilB) [Rubrivivax gelatinosus isolate YF6]
ATGGCCGCCGACACCACCGTCGAGACGCAGCAGACCGCACTGTCCGGCGTCGCCCGCGTCCTGGTGCATGCCGGCAAGCT
CAACGCCCGCACCGCCGAGGACCTGGCGCGCAGCGCGCGCGAGCGCAAGACGAGCTTCGTCTCGGCCGTCGTCGCCGCCG
GCGCGCTCAAGCCCGACGAGCTCGCGCATGCGCTGTCGGGCGCGCTGGCCCTGCCGCTGCTGGACCTCAACGCGGTCGAC
CTGCAGAAGCTGCCGCGCAACCTGCTCGACGCCCGGACCGCAGCCCAGTACCAGGTCATCGTGCTGGGCAAACGCGGCAA
CCGGCTGTTCATCGGCGCCGCCGACCCGACCGACCAGGAAGCGGTCGAACGCATCAAGTTCGCGACCCAGCTGACGCCGG
AATGGGTCATCGTCGAGTACGACAAGCTGATGCGCCAGCTCGACGCCCAGGGCCAGAGCGCCAACGAGGTGCTCGAGTCG
CTGGCCGGCGAGGACTTCGACTTCGACGTCAGCGACGACACCACGACCACCGCCGAGGCCGAGGTCTCCACCGAGGTGGA
GGACGCCCCGGTCGTGCGCTTCCTGCAGAAGATGCTGATCGACGCGATCAACGCGCGCGCCTCCGACCTGCACTTCGAGC
CCTACGAATACAACTACCGGGTGCGTTTCCGCATCGACGGCGAGCTGCGCGAGATCACCCAGCCGCCGATCGCCATCAAG
GACAAGCTCGCCTCGCGCATCAAGGTCATCTCGCGCATGGACATCGCCGAGAAGCGGGTCCCGCAGGACGGCCGGATGAA
GCTGAAGTTCGGCAGCAAGGCGATCGACTTCCGCGTCAGCACGCTGCCCACGCTGTTCGGCGAGAAGGTCGTGATCCGGA
TCCTGGACCCGTCCTCGGCCAAGCTCGGCATCGAGGCCCTGGGCTACGAGAAGGTCGAGAAGGACCGGCTGCTCGCCGCG
ATCCAGCGCCCCTACGGGATGATCCTGGTCACCGGGCCGACCGGCAGCGGCAAGACGGTGTCGCTCTACACCTGCCTGAA
CATCCTCAACCAGCCCGGCGTGAACATCGCCACCGTCGAGGACCCGGCCGAAATCAACCTGCCGGGCATCAACCAGGTCA
ACGTCAACGACAAGGCGGGGCTGACCTTCGCCGCGGCGCTGAAGGCCTTCCTGCGCCAGGACCCGGACATCATCATGGTC
GGCGAAATCCGCGACCTGGAAACCGCCGACATCGCGATCAAGGCGGCGCAGACCGGCCACCTGGTGATGAGCACGCTGCA
CACCAACGACGCGCCGACGACGCTGACGCGGCTGCTGAACATGGGCGTGGCACCGTTCAACATCGCCGCCAGCGTGCTGC
TGATCACCGCGCAGCGTCTGGCGCGCCGTTTGTGTGAAGTCTGCAAGAAACCGGCCGAGTATCCGCGCGAGGCGCTGCTC
AAGGCGGGGTATACCGACGCCGATCTGGACGGAAGCTGGAAGCCGTATCGTGCGGTCGGCTGCTCCGCCTGCAACAACGG
CTACAAGGGCCGCGTCGGCATCTATCAGGTGATGCCGATCACCGAGTCCATCCAGCGCGTCATCCTCTCCGAGGGCACCG
CGCTGGACATCGCCGAGCAGGCCAAGCGCGAAGGCGTGCGCGACCTGCGCCAGTCCGGTCTCGTGAAGGTGCGCCAGGGC
GTCACCTCGCTCGAGGAAGTCATCACCGTCACCAACGAATAA
ATGGCCGCCGACACCACCGTCGAGACGCAGCAGACCGCACTGTCCGGCGTCGCCCGCGTCCTGGTGCATGCCGGCAAGCT
CAACGCCCGCACCGCCGAGGACCTGGCGCGCAGCGCGCGCGAGCGCAAGACGAGCTTCGTCTCGGCCGTCGTCGCCGCCG
GCGCGCTCAAGCCCGACGAGCTCGCGCATGCGCTGTCGGGCGCGCTGGCCCTGCCGCTGCTGGACCTCAACGCGGTCGAC
CTGCAGAAGCTGCCGCGCAACCTGCTCGACGCCCGGACCGCAGCCCAGTACCAGGTCATCGTGCTGGGCAAACGCGGCAA
CCGGCTGTTCATCGGCGCCGCCGACCCGACCGACCAGGAAGCGGTCGAACGCATCAAGTTCGCGACCCAGCTGACGCCGG
AATGGGTCATCGTCGAGTACGACAAGCTGATGCGCCAGCTCGACGCCCAGGGCCAGAGCGCCAACGAGGTGCTCGAGTCG
CTGGCCGGCGAGGACTTCGACTTCGACGTCAGCGACGACACCACGACCACCGCCGAGGCCGAGGTCTCCACCGAGGTGGA
GGACGCCCCGGTCGTGCGCTTCCTGCAGAAGATGCTGATCGACGCGATCAACGCGCGCGCCTCCGACCTGCACTTCGAGC
CCTACGAATACAACTACCGGGTGCGTTTCCGCATCGACGGCGAGCTGCGCGAGATCACCCAGCCGCCGATCGCCATCAAG
GACAAGCTCGCCTCGCGCATCAAGGTCATCTCGCGCATGGACATCGCCGAGAAGCGGGTCCCGCAGGACGGCCGGATGAA
GCTGAAGTTCGGCAGCAAGGCGATCGACTTCCGCGTCAGCACGCTGCCCACGCTGTTCGGCGAGAAGGTCGTGATCCGGA
TCCTGGACCCGTCCTCGGCCAAGCTCGGCATCGAGGCCCTGGGCTACGAGAAGGTCGAGAAGGACCGGCTGCTCGCCGCG
ATCCAGCGCCCCTACGGGATGATCCTGGTCACCGGGCCGACCGGCAGCGGCAAGACGGTGTCGCTCTACACCTGCCTGAA
CATCCTCAACCAGCCCGGCGTGAACATCGCCACCGTCGAGGACCCGGCCGAAATCAACCTGCCGGGCATCAACCAGGTCA
ACGTCAACGACAAGGCGGGGCTGACCTTCGCCGCGGCGCTGAAGGCCTTCCTGCGCCAGGACCCGGACATCATCATGGTC
GGCGAAATCCGCGACCTGGAAACCGCCGACATCGCGATCAAGGCGGCGCAGACCGGCCACCTGGTGATGAGCACGCTGCA
CACCAACGACGCGCCGACGACGCTGACGCGGCTGCTGAACATGGGCGTGGCACCGTTCAACATCGCCGCCAGCGTGCTGC
TGATCACCGCGCAGCGTCTGGCGCGCCGTTTGTGTGAAGTCTGCAAGAAACCGGCCGAGTATCCGCGCGAGGCGCTGCTC
AAGGCGGGGTATACCGACGCCGATCTGGACGGAAGCTGGAAGCCGTATCGTGCGGTCGGCTGCTCCGCCTGCAACAACGG
CTACAAGGGCCGCGTCGGCATCTATCAGGTGATGCCGATCACCGAGTCCATCCAGCGCGTCATCCTCTCCGAGGGCACCG
CGCTGGACATCGCCGAGCAGGCCAAGCGCGAAGGCGTGCGCGACCTGCGCCAGTCCGGTCTCGTGAAGGTGCGCCAGGGC
GTCACCTCGCTCGAGGAAGTCATCACCGTCACCAACGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
54.965 |
98.429 |
0.541 |
| pilF | Neisseria gonorrhoeae MS11 |
54.626 |
98.08 |
0.536 |
| pilB | Acinetobacter baylyi ADP1 |
53.873 |
99.127 |
0.534 |
| pilB | Legionella pneumophila strain ERS1305867 |
49.04 |
100 |
0.49 |
| pilB | Vibrio cholerae strain A1552 |
46.018 |
98.604 |
0.454 |
| pilB | Vibrio campbellii strain DS40M4 |
45.39 |
98.429 |
0.447 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
45.374 |
98.08 |
0.445 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.431 |
92.67 |
0.384 |
| pilF | Thermus thermophilus HB27 |
38.324 |
97.906 |
0.375 |