Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACM530_RS10850 Genome accession   NZ_CP181333
Coordinates   2369989..2371485 (-) Length   498 a.a.
NCBI ID   WP_369301882.1    Uniprot ID   -
Organism   Pseudomonas sp. NFX183     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2364989..2376485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM530_RS10830 (ACM530_10830) - 2364998..2366401 (-) 1404 WP_416364755.1 NorM family multidrug efflux MATE transporter -
  ACM530_RS10835 (ACM530_10835) - 2366539..2367459 (+) 921 WP_124418743.1 LysR substrate-binding domain-containing protein -
  ACM530_RS10840 (ACM530_10840) - 2367627..2369603 (+) 1977 WP_145158097.1 methyl-accepting chemotaxis protein -
  ACM530_RS10845 (ACM530_10845) - 2369623..2369784 (+) 162 Protein_2129 TetR/AcrR family transcriptional regulator -
  ACM530_RS10850 (ACM530_10850) comM 2369989..2371485 (-) 1497 WP_369301882.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACM530_RS10855 (ACM530_10855) - 2371700..2371963 (-) 264 WP_145158091.1 accessory factor UbiK family protein -
  ACM530_RS10860 (ACM530_10860) glnK 2372387..2372725 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACM530_RS10865 (ACM530_10865) - 2372760..2374100 (+) 1341 WP_145158088.1 ammonium transporter -
  ACM530_RS10870 (ACM530_10870) - 2374310..2374735 (+) 426 WP_071485166.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACM530_RS10875 (ACM530_10875) sutA 2374838..2375164 (+) 327 WP_106575834.1 transcriptional regulator SutA -
  ACM530_RS10880 (ACM530_10880) - 2375371..2376066 (-) 696 WP_242199622.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53409.76 Da        Isoelectric Point: 8.4994

>NTDB_id=1099779 ACM530_RS10850 WP_369301882.1 2369989..2371485(-) (comM) [Pseudomonas sp. NFX183]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNCALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGQVPIEPYKSDGLQYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPTQQP
GDNTAKASAQVADARERQLKRQGCANAFLDLPGLRKHCQLAKADEGWLESACERLTLSLRAAHRLLKVARTLADLERVEN
IARHHLAEALQYRPAAVS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1099779 ACM530_RS10850 WP_369301882.1 2369989..2371485(-) (comM) [Pseudomonas sp. NFX183]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATTGGCGTCGAAGCCCCTGCCGTCACGGTTGAAGTGCACATGGCCAA
TGGTCTGCCGTCCCTGACACTGGTGGGCCTGCCGGAAACCGCCGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAATTGCGCGCTGCAATACCCAGCCCGGCGCATCACCCTCAACCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCCTTGGGCATCCTGGCGGCCAGTGTGCAGGTGCCGGCGTTGATGCTCGATGACGTGGAATGCCT
GGGCGAATTAGCATTGTCCGGCGAAGTACGCGCAGTGAAAGGCGTGTTGCCGGCAGCGCTGGCAGCCCGCAAGGCCGGGC
GCACCGTGATAGTGCCGCGGGCGAATGCCGAGGAGGCGTGCCTGGCCTCCGGGTTGAAGGTGATTGCGGTGGATCACTTG
CTGCAGGTGGTGGCGCACCTGAATGGGCAGGTGCCGATCGAGCCCTACAAGTCTGATGGCTTGCAGTACCTGAACAAGCC
CTATCCAGACCTGAGCGAAGTACAAGGGCAACTAGCGGCCAAGCGCGCGCTGCTGATCGCTGCGGCGGGCGCGCATAACC
TGCTGTTCAGCGGGCCGCCCGGCACCGGCAAGACTTTGCTGGCCAGCCGGCTGCCGGGGTTGCTGCCGCCGTTGAGCGAG
CAGGAAGCGCTGGAAGTGGCGGCGATCCAGTCAGTGGTCAGCCTCGCACCACTGAGCCATTGGCCGCACCGCCCGTTCCG
TCAGCCACACCATTCAGCCTCGGGGCCAGCGCTGGTGGGCGGCGGATCAAAACCGCAACCGGGGGAAATCACCCTCGCCC
ACCACGGCGTGTTGTTTCTGGATGAGTTGCCGGAGTTCGATCGCAAGGTCCTGGAGGTGCTGCGCGAACCGCTTGAATCG
GGACACATCGTCATTTCTCGTGCCCGCGACCGAGTGAGTTTCCCGGCACGTTTTCAACTGGTGGCGGCCATGAACCCCTG
CCCTTGCGGGTATATGGGCGAGCCCAGTGGACGCTGTCGGTGTACGCCGGAGCAGATTCAGCGCTATCGCAACAAACTTT
CCGGCCCCCTGCTGGACCGGATCGACTTGCACCTTACCGTCGCCCGGGAAACCACGGCACTTAACCCGACCCAGCAGCCT
GGCGATAACACGGCAAAGGCCTCGGCACAGGTGGCCGACGCCCGCGAGCGCCAACTCAAGCGCCAGGGTTGCGCCAATGC
CTTTCTGGATTTGCCAGGGTTACGCAAACACTGCCAATTGGCGAAAGCCGATGAAGGCTGGCTGGAAAGCGCCTGCGAGC
GGCTGACGCTGTCGCTGCGCGCGGCACATCGCTTGCTCAAGGTGGCGCGCACGCTGGCAGACCTTGAGCGGGTTGAGAAT
ATCGCTCGGCATCACTTGGCCGAGGCATTGCAATATCGGCCTGCGGCGGTGAGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.855

99.598

0.566
  comM Glaesserella parasuis strain SC1401

55.888

100

0.562
  comM Vibrio campbellii strain DS40M4

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55.2

100

0.554
  comM Legionella pneumophila str. Paris

51.004

100

0.51
  comM Legionella pneumophila strain ERS1305867

51.004

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47

Multiple sequence alignment