Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACGHAD_RS14890 Genome accession   NZ_AP031500
Coordinates   3518215..3519282 (-) Length   355 a.a.
NCBI ID   WP_339615664.1    Uniprot ID   -
Organism   Gilvimarinus japonicus strain 12-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3513215..3524282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHAD_RS14865 (R50076_29640) aroK 3513823..3514329 (-) 507 WP_339615669.1 shikimate kinase AroK -
  ACGHAD_RS14870 (R50076_29650) pilQ 3514334..3516448 (-) 2115 WP_382417766.1 type IV pilus secretin PilQ Machinery gene
  ACGHAD_RS14875 (R50076_29660) - 3516485..3517024 (-) 540 WP_382417765.1 pilus assembly protein PilP -
  ACGHAD_RS14880 (R50076_29670) - 3517017..3517631 (-) 615 WP_382417763.1 type 4a pilus biogenesis protein PilO -
  ACGHAD_RS14885 (R50076_29680) - 3517631..3518215 (-) 585 WP_339615665.1 PilN domain-containing protein -
  ACGHAD_RS14890 (R50076_29690) pilM 3518215..3519282 (-) 1068 WP_339615664.1 pilus assembly protein PilM Machinery gene
  ACGHAD_RS14895 (R50076_29700) - 3519438..3521876 (+) 2439 WP_382417760.1 penicillin-binding protein 1A -
  ACGHAD_RS14900 (R50076_29710) rpmE 3521988..3522206 (-) 219 WP_339615662.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38832.04 Da        Isoelectric Point: 4.1259

>NTDB_id=109967 ACGHAD_RS14890 WP_339615664.1 3518215..3519282(-) (pilM) [Gilvimarinus japonicus strain 12-2]
MGIFGFLEKKTKPVVGLDISSTSVKLLELSRSGDRYRVETYAVRPLPPNAVVEKNINDEEAVAEVIKSLVKQSKTKIKHA
AVSVAGSAVITKVIEMPAGLSEDDLENRIYIEADQYIPFPIDEVSIDFEVQGESPNDPDQVEVLLAACRTENVESRVSTL
LLAGLEEEIVDVEAYAMERAFEFVLEQLEDQDNQVVAVLDIGATMTTLSVLVDGKTVYTREQLFGGRQLTEEIQRRYGLS
MEEAGLAKKQGGLPDDYQSEVLQPFKESVVQQVTRSLQFFFSASEYNDVDYIVLAGGVASMEGLIELIEEKLGTQAMVAN
PFASMSVASRVNAAALANDAPSLMVATGLAMRSFD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=109967 ACGHAD_RS14890 WP_339615664.1 3518215..3519282(-) (pilM) [Gilvimarinus japonicus strain 12-2]
ATGGGCATTTTCGGATTCTTAGAAAAAAAGACGAAGCCAGTTGTGGGGTTAGACATAAGTTCGACGTCTGTAAAACTCTT
AGAGCTGAGCCGTAGTGGCGATCGGTACCGGGTAGAGACCTACGCGGTTAGACCTTTGCCTCCCAACGCTGTTGTTGAGA
AAAACATCAACGATGAAGAGGCGGTTGCCGAGGTTATCAAGTCGCTGGTTAAACAGTCAAAGACCAAAATCAAGCATGCG
GCGGTGTCAGTTGCCGGCTCCGCTGTGATCACTAAGGTCATTGAAATGCCGGCTGGGCTGTCAGAAGACGACCTGGAAAA
CCGAATCTACATCGAAGCTGATCAGTACATCCCTTTCCCTATTGACGAAGTCTCCATTGATTTTGAGGTTCAGGGCGAGT
CGCCCAACGACCCGGATCAGGTGGAGGTACTGCTCGCTGCGTGTCGCACTGAAAATGTCGAATCTCGTGTCTCGACCCTG
CTATTAGCCGGGCTAGAAGAAGAGATTGTCGATGTTGAGGCATATGCGATGGAGCGTGCCTTTGAGTTTGTGCTTGAACA
GCTTGAAGATCAGGATAATCAGGTGGTGGCGGTGCTCGATATTGGCGCCACTATGACGACCTTGAGTGTGCTGGTGGATG
GCAAGACAGTTTATACCCGCGAACAGCTCTTCGGCGGTCGACAGCTCACCGAAGAGATTCAACGGCGTTACGGATTATCG
ATGGAGGAGGCCGGACTCGCTAAGAAGCAAGGAGGCTTGCCCGATGATTATCAGTCGGAAGTCCTTCAGCCCTTTAAAGA
GTCTGTGGTGCAGCAGGTTACTCGCTCGTTGCAGTTTTTCTTTTCGGCCAGCGAGTATAACGATGTGGATTACATCGTGT
TGGCCGGCGGTGTTGCCTCAATGGAGGGGTTGATTGAGCTCATAGAAGAAAAGCTTGGCACTCAGGCAATGGTGGCAAAC
CCGTTTGCCAGTATGTCTGTGGCATCGCGTGTGAACGCGGCGGCGTTAGCAAACGATGCGCCCTCATTGATGGTGGCAAC
TGGCCTGGCGATGAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.331

97.746

0.541
  comM Acinetobacter nosocomialis M2

55.043

97.746

0.538
  comM Acinetobacter baylyi ADP1

53.026

97.746

0.518
  pilM Legionella pneumophila strain ERS1305867

44.507

100

0.445

Multiple sequence alignment