Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ACGHAD_RS09895 Genome accession   NZ_AP031500
Coordinates   2309167..2309460 (-) Length   97 a.a.
NCBI ID   WP_382415317.1    Uniprot ID   -
Organism   Gilvimarinus japonicus strain 12-2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2304167..2314460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHAD_RS09875 (R50076_19580) galU 2304946..2305839 (-) 894 WP_339615026.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACGHAD_RS09880 (R50076_19590) - 2305894..2307255 (-) 1362 WP_382415323.1 phosphomannomutase CpsG -
  ACGHAD_RS09885 (R50076_19600) cmk 2307495..2308169 (-) 675 WP_382415321.1 (d)CMP kinase -
  ACGHAD_RS09890 (R50076_19610) pyrF 2308159..2308908 (-) 750 WP_382415319.1 orotidine-5'-phosphate decarboxylase -
  ACGHAD_RS09895 (R50076_19620) comE1/comEA 2309167..2309460 (-) 294 WP_382415317.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10324.88 Da        Isoelectric Point: 4.2702

>NTDB_id=109962 ACGHAD_RS09895 WP_382415317.1 2309167..2309460(-) (comE1/comEA) [Gilvimarinus japonicus strain 12-2]
MKRLFCSFLIAITSVVFSPLAVIAAEPDTAASTVAPININTADAQELTALNGVGEAKAEAIIAWREENGPFEKVDQLLEV
NGIGEATLSDIRKRVVL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=109962 ACGHAD_RS09895 WP_382415317.1 2309167..2309460(-) (comE1/comEA) [Gilvimarinus japonicus strain 12-2]
ATGAAGCGTTTATTCTGTAGCTTTCTAATTGCCATTACCTCTGTTGTATTCTCACCGCTAGCGGTTATTGCGGCCGAACC
AGATACTGCGGCAAGTACCGTCGCTCCGATAAATATTAATACAGCGGATGCCCAAGAGTTGACGGCGTTAAACGGTGTGG
GAGAGGCAAAAGCCGAGGCCATTATTGCGTGGCGTGAGGAGAACGGGCCTTTTGAAAAGGTTGATCAGCTGCTTGAGGTC
AACGGTATTGGAGAGGCCACTCTAAGTGATATTCGTAAGCGGGTTGTTTTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(36-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

42.857

100

0.495
  comEA Vibrio parahaemolyticus RIMD 2210633

39.785

95.876

0.381
  comEA Legionella pneumophila str. Paris

37

100

0.381
  comEA Legionella pneumophila strain ERS1305867

37

100

0.381
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.462

93.814

0.361
  comEA Vibrio campbellii strain DS40M4

36.458

98.969

0.361

Multiple sequence alignment