Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACM67B_RS10785 Genome accession   NZ_CP181247
Coordinates   2245046..2246242 (-) Length   398 a.a.
NCBI ID   WP_416189600.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2240046..2251242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS10765 (ACM67B_10765) - 2241101..2241352 (-) 252 WP_095501954.1 YfhL family 4Fe-4S dicluster ferredoxin -
  ACM67B_RS10770 (ACM67B_10770) rsmD 2241472..2242047 (-) 576 WP_416189598.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACM67B_RS10775 (ACM67B_10775) topA 2242189..2244510 (-) 2322 WP_416189599.1 type I DNA topoisomerase -
  ACM67B_RS10780 (ACM67B_10780) - 2244574..2245029 (-) 456 WP_100564325.1 DUF494 family protein -
  ACM67B_RS10785 (ACM67B_10785) dprA 2245046..2246242 (-) 1197 WP_416189600.1 DNA-processing protein DprA Machinery gene
  ACM67B_RS10790 (ACM67B_10790) - 2246412..2247692 (-) 1281 WP_416189601.1 sigma-54-dependent transcriptional regulator -
  ACM67B_RS10795 (ACM67B_10795) - 2247679..2249808 (-) 2130 WP_416189602.1 ATP-binding protein -
  ACM67B_RS10800 (ACM67B_10800) - 2249812..2250405 (-) 594 WP_416189603.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 43113.26 Da        Isoelectric Point: 5.2728

>NTDB_id=1099586 ACM67B_RS10785 WP_416189600.1 2245046..2246242(-) (dprA) [Neisseria sp. CCUG17229]
MNDNERFAWVQLALTPYIGAESFLLLLQHFGSAEAALAAPSEIIAKLVRHKQAVAAWQQADKRDAAKAAAEAALNWAQQE
HCRLLLLQDDDFPDMLTEGITPPPLLFLRGNSDLLHKPSAAIVGSRHATPQAMRIARDFGMALSEQGIPVVSGMAAGIDT
AAHQGALLSDGGTIAVWGTGIDRIYPPSNKQLAYEIAERGLIISEFPLDTRPYAGNFPRRNRLIAALSRLTLVVEAAVES
GSLITAKLAAEMGREVMAVPGSIDNPHSKGCHKLIKEGAKLVESLEDIVQECPQLLQNTPLPSYSIYKRPQNTLAVEPKA
KPETSAKPLVETDIRPSETQNTADNTLLNAMGYDAIHPDTLAELLNWPAADVYAQLLEYELDGVIAPLAGGRYQRIKT

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=1099586 ACM67B_RS10785 WP_416189600.1 2245046..2246242(-) (dprA) [Neisseria sp. CCUG17229]
ATGAACGATAACGAACGCTTTGCATGGGTACAACTCGCGCTGACGCCTTACATCGGTGCGGAAAGTTTTTTGCTTTTGCT
GCAGCATTTCGGCAGCGCAGAAGCGGCATTGGCCGCGCCGTCTGAAATCATCGCGAAACTGGTGCGGCATAAACAAGCCG
TGGCTGCGTGGCAACAAGCTGATAAACGCGATGCTGCCAAAGCCGCTGCCGAAGCCGCGTTAAACTGGGCGCAGCAGGAG
CATTGCCGCTTGCTGCTGTTGCAGGACGATGATTTCCCCGATATGCTGACCGAAGGCATCACGCCGCCGCCGTTGTTATT
TTTGCGCGGCAATAGCGATTTGTTGCACAAGCCTTCCGCCGCGATTGTCGGCAGTCGCCATGCTACCCCGCAGGCGATGC
GCATTGCCCGCGATTTCGGCATGGCTTTGAGTGAACAAGGCATTCCGGTGGTTTCGGGTATGGCGGCCGGCATCGATACC
GCCGCCCATCAAGGCGCGCTGCTTTCAGACGGCGGTACCATCGCCGTATGGGGCACAGGCATAGACCGTATTTATCCGCC
ATCGAATAAACAGCTTGCCTACGAAATTGCCGAGCGTGGGCTGATTATCAGCGAGTTTCCATTAGACACGCGGCCATATG
CCGGTAATTTTCCGCGCCGCAACCGCCTGATTGCTGCTTTATCGCGTTTGACTTTGGTGGTGGAAGCGGCGGTAGAGTCG
GGTTCGCTGATTACCGCCAAGCTCGCTGCCGAGATGGGGCGTGAAGTGATGGCCGTTCCCGGTTCGATTGATAATCCGCA
TAGCAAAGGCTGTCACAAGCTGATTAAAGAGGGCGCCAAACTGGTGGAAAGCTTGGAAGATATCGTACAAGAATGTCCGC
AGCTATTGCAAAACACCCCATTACCATCATATTCTATATATAAGCGTCCGCAAAACACACTGGCCGTCGAGCCGAAAGCC
AAGCCCGAGACAAGCGCCAAACCGCTTGTTGAAACCGATATCAGGCCGTCTGAAACCCAAAACACGGCAGACAACACGTT
ATTAAACGCCATGGGTTACGATGCCATTCATCCCGATACCTTGGCCGAGTTGCTGAATTGGCCGGCGGCTGATGTATATG
CCCAATTGCTGGAATATGAGCTGGACGGCGTGATTGCCCCGCTGGCCGGCGGACGCTACCAACGGATTAAAACATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

69.403

100

0.701

  dprA Neisseria gonorrhoeae strain FA1090

69.154

100

0.698

  dprA Neisseria meningitidis strain C311

69.25

100

0.696

  dprA Neisseria meningitidis MC58

69.25

100

0.696

  dprA Vibrio cholerae strain A1552

37.879

99.497

0.377

  dprA Vibrio campbellii strain DS40M4

36.709

99.246

0.364


Multiple sequence alignment