Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACM67D_RS11130 Genome accession   NZ_CP181245
Coordinates   2121216..2121722 (-) Length   168 a.a.
NCBI ID   WP_416192810.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain LNP 16626     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2116216..2126722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67D_RS11110 (ACM67D_11110) msrAB 2116774..2118342 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  ACM67D_RS11115 (ACM67D_11115) pilA 2118488..2119741 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  ACM67D_RS11120 (ACM67D_11120) - 2120003..2120701 (-) 699 WP_416192806.1 opacity family porin -
  ACM67D_RS11125 (ACM67D_11125) - 2120724..2120855 (-) 132 WP_257736904.1 hypothetical protein -
  ACM67D_RS11130 (ACM67D_11130) pilE 2121216..2121722 (-) 507 WP_416192810.1 pilin Machinery gene
  ACM67D_RS11135 (ACM67D_11135) - 2122091..2122234 (-) 144 WP_050303184.1 hypothetical protein -
  ACM67D_RS11140 (ACM67D_11140) - 2122339..2122419 (-) 81 Protein_2156 pilin -
  ACM67D_RS11145 (ACM67D_11145) - 2122537..2122959 (-) 423 Protein_2157 pilin -
  ACM67D_RS11150 (ACM67D_11150) lpxC 2123087..2124010 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  ACM67D_RS11155 (ACM67D_11155) - 2124531..2124950 (-) 420 Protein_2159 pilin -
  ACM67D_RS11160 (ACM67D_11160) - 2125109..2125558 (-) 450 Protein_2160 pilin -
  ACM67D_RS11165 (ACM67D_11165) - 2125647..2126042 (-) 396 Protein_2161 pilin -
  ACM67D_RS11170 (ACM67D_11170) - 2126163..2126504 (-) 342 Protein_2162 pilin -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17960.29 Da        Isoelectric Point: 5.7788

>NTDB_id=1099520 ACM67D_RS11130 WP_416192810.1 2121216..2121722(-) (pilE) [Neisseria gonorrhoeae strain LNP 16626]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPEDNGSAGVAASSKII
GKYVKQVEVKNGVVTATMNSSGVNKEIQGKRLSLWAKREDGSVKWFCGQPVTRDDKAAKDDVTDDASNNGIETKHLPSTC
RDAASAGT

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1099520 ACM67D_RS11130 WP_416192810.1 2121216..2121722(-) (pilE) [Neisseria gonorrhoeae strain LNP 16626]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCGGCATACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCGGAAGACAACGGCTCTGCCGGCGTGGCAGCTTCTTCAAAAATCATA
GGCAAATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCACAATGAATTCAAGCGGCGTAAACAAAGAAAT
CCAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
ACGACAAAGCCGCCAAAGACGACGTCACCGACGACGCCAGCAACAACGGCATCGAAACCAAGCACCTGCCGTCAACCTGC
CGCGACGCAGCATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

81.325

98.81

0.804
  pilE Neisseria gonorrhoeae MS11

80.723

98.81

0.798
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

32.02

100

0.387
  comP Acinetobacter baylyi ADP1

38.182

98.214

0.375
  pilA/pilA1 Eikenella corrodens VA1

35.429

100

0.369

Multiple sequence alignment