Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ACM67E_RS03535 Genome accession   NZ_CP181244
Coordinates   759207..759506 (+) Length   99 a.a.
NCBI ID   WP_416191716.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 754207..764506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS03520 (ACM67E_03520) - 755700..755903 (+) 204 WP_416191715.1 hypothetical protein -
  ACM67E_RS03535 (ACM67E_03535) comE 759207..759506 (+) 300 WP_416191716.1 ComEA family DNA-binding protein Machinery gene
  ACM67E_RS03540 (ACM67E_03540) - 759590..760390 (-) 801 WP_416192236.1 IS3 family transposase -
  ACM67E_RS03545 (ACM67E_03545) - 760387..760734 (-) 348 WP_416192237.1 helix-turn-helix domain-containing protein -
  ACM67E_RS03550 (ACM67E_03550) comL 760862..761665 (-) 804 WP_416192238.1 outer membrane protein assembly factor BamD Machinery gene
  ACM67E_RS03555 (ACM67E_03555) rluD 761664..762788 (+) 1125 WP_416192239.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACM67E_RS03560 (ACM67E_03560) pgeF 762886..763668 (+) 783 WP_416192240.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10367.09 Da        Isoelectric Point: 10.7749

>NTDB_id=1099448 ACM67E_RS03535 WP_416191716.1 759207..759506(+) (comE) [Neisseria sp. CCUG12390]
MHSTLKKIFFYGLATLAASVSSAAVNINTASESELTALPGVGPAKAKAIVAYRKQHGNFKTVDELKNVKGIGEGIFSKLR
NEATVAAPVKKAAQPAVKK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1099448 ACM67E_RS03535 WP_416191716.1 759207..759506(+) (comE) [Neisseria sp. CCUG12390]
ATGCACAGTACTTTGAAAAAGATCTTCTTCTACGGGTTGGCAACGCTGGCAGCATCGGTCAGCAGTGCTGCGGTGAACAT
CAATACGGCTTCGGAGAGCGAGCTGACGGCTTTACCGGGTGTGGGGCCTGCGAAAGCGAAGGCGATAGTGGCGTACCGCA
AACAGCATGGGAATTTTAAGACGGTTGACGAGTTGAAAAACGTGAAGGGGATAGGGGAAGGGATCTTCTCGAAGCTGAGG
AATGAGGCGACGGTTGCGGCGCCGGTGAAGAAGGCTGCGCAGCCTGCCGTGAAAAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

53

100

0.535
  comE Neisseria gonorrhoeae MS11

53

100

0.535
  comE Neisseria gonorrhoeae MS11

53

100

0.535
  comE Neisseria gonorrhoeae MS11

53

100

0.535
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.383

81.818

0.404

Multiple sequence alignment