Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACM67E_RS03550 Genome accession   NZ_CP181244
Coordinates   760862..761665 (-) Length   267 a.a.
NCBI ID   WP_416192238.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 755862..766665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS03535 (ACM67E_03535) comE 759207..759506 (+) 300 WP_416191716.1 ComEA family DNA-binding protein Machinery gene
  ACM67E_RS03540 (ACM67E_03540) - 759590..760390 (-) 801 WP_416192236.1 IS3 family transposase -
  ACM67E_RS03545 (ACM67E_03545) - 760387..760734 (-) 348 WP_416192237.1 helix-turn-helix domain-containing protein -
  ACM67E_RS03550 (ACM67E_03550) comL 760862..761665 (-) 804 WP_416192238.1 outer membrane protein assembly factor BamD Machinery gene
  ACM67E_RS03555 (ACM67E_03555) rluD 761664..762788 (+) 1125 WP_416192239.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACM67E_RS03560 (ACM67E_03560) pgeF 762886..763668 (+) 783 WP_416192240.1 peptidoglycan editing factor PgeF -
  ACM67E_RS03565 (ACM67E_03565) lptE 764149..764625 (+) 477 WP_416192241.1 LPS assembly lipoprotein LptE -
  ACM67E_RS03570 (ACM67E_03570) holA 764626..765627 (+) 1002 WP_416192242.1 DNA polymerase III subunit delta -
  ACM67E_RS03575 (ACM67E_03575) - 765802..766221 (+) 420 WP_416192243.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31207.09 Da        Isoelectric Point: 7.4059

>NTDB_id=1099449 ACM67E_RS03550 WP_416192238.1 760862..761665(-) (comL) [Neisseria sp. CCUG12390]
MKKILLSVSLSLVLSACANTGTVDKDAQITQDWSVEQLYTEAQDELNSNNYTRAVKLYELLESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYHAFSQLVERYPNS
KYASDATERMTKLVDALGGNEIAVARYYMKRGAYIAAINRAQKIVQQYQNTRYVEESLAMMELAYKKLEKPQLAADTRRI
LQQNFPQSPFLTHEWRNGDMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1099449 ACM67E_RS03550 WP_416192238.1 760862..761665(-) (comL) [Neisseria sp. CCUG12390]
ATGAAAAAAATTCTTTTATCTGTTTCTCTAAGTTTGGTTCTCAGCGCATGTGCCAATACGGGCACCGTCGATAAAGACGC
TCAAATCACTCAGGATTGGAGTGTCGAACAACTTTACACCGAAGCACAAGATGAATTGAACAGCAACAATTATACGCGAG
CCGTCAAGTTATATGAACTGCTGGAGTCACGCTTCCCCAATGGCCGCTATGCGCAGCAGTCGCAATTGGATACCGCCTAT
GCTTACTATAAAGATGACGAGCCGGAAAAAGCACTGGCCGCCATCGACCGCTTCCAACGCCATCACCCCCAACATCCGAA
TATGGATTATGCCTTATATTTGAAAGGCTTGGTTTTGTTTAACGAAGACCAATCATTCTTAAACAAATTGGCCTCGCAAG
ACTGGTCTGACCGCGATCCCAAAGCAAACCGCGATGCCTATCATGCATTTTCGCAATTGGTGGAACGTTATCCTAACAGC
AAGTATGCATCCGATGCGACTGAACGCATGACCAAATTGGTCGATGCATTGGGCGGAAACGAAATTGCCGTAGCCCGCTA
CTACATGAAACGCGGTGCGTATATCGCTGCCATTAACCGCGCGCAAAAAATTGTTCAGCAATACCAAAATACACGTTATG
TCGAAGAATCATTGGCCATGATGGAACTGGCTTACAAAAAGCTGGAAAAACCTCAATTGGCCGCGGACACACGCCGCATT
TTGCAGCAAAACTTCCCGCAAAGCCCGTTTCTGACACATGAATGGCGCAACGGCGATATGCCGTGGTGGCGTTATTGGAA
GTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

83.083

99.625

0.828
  comL Neisseria gonorrhoeae MS11

82.331

99.625

0.82

Multiple sequence alignment