Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACGHTT_RS19175 Genome accession   NZ_AP031497
Coordinates   4302061..4303554 (+) Length   497 a.a.
NCBI ID   WP_390592615.1    Uniprot ID   -
Organism   Simiduia litorea strain KMM 9504     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4297061..4308554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHTT_RS19145 (R50072_38380) - 4297826..4298527 (+) 702 WP_390592611.1 DUF523 domain-containing protein -
  ACGHTT_RS19150 (R50072_38390) - 4298524..4298862 (-) 339 WP_253358268.1 P-II family nitrogen regulator -
  ACGHTT_RS19155 (R50072_38400) - 4299049..4300311 (-) 1263 WP_390592612.1 ammonium transporter -
  ACGHTT_RS19160 (R50072_38410) - 4300359..4300697 (-) 339 WP_290259949.1 P-II family nitrogen regulator -
  ACGHTT_RS19165 (R50072_38420) - 4300758..4301420 (-) 663 WP_390592613.1 TorF family putative porin -
  ACGHTT_RS19170 (R50072_38430) - 4301774..4301992 (+) 219 WP_390592614.1 accessory factor UbiK family protein -
  ACGHTT_RS19175 (R50072_38440) comM 4302061..4303554 (+) 1494 WP_390592615.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACGHTT_RS19180 (R50072_38450) - 4303575..4305278 (-) 1704 WP_390592616.1 EAL domain-containing protein -
  ACGHTT_RS19185 (R50072_38460) - 4305533..4306081 (+) 549 WP_390592617.1 ArnT family glycosyltransferase -
  ACGHTT_RS19190 (R50072_38470) - 4306130..4306984 (+) 855 WP_390592618.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53943.83 Da        Isoelectric Point: 8.0585

>NTDB_id=109915 ACGHTT_RS19175 WP_390592615.1 4302061..4303554(+) (comM) [Simiduia litorea strain KMM 9504]
MSLAIVHSRARSGIQAPVVEVEVHLSNGLPGLAIVGLPETAVKESKDRVRSALINSHFEFPSRRITINLAPADLPKEGGR
FDLPIALGILAASGQIPAQALANVECVGELALSGELRPISACLPAVIASHAEGRQLILPADNSHEAALYSQAKPLMAGNL
LEVCAHLHGRSQLNPCTSRPAEPIPNSQDLADVRGQPQARRALEIAAAGQHNLLFYGPPGTGKTLLASRLNTLLPPLSDE
EALDIALIHSVAGAPHRWRERPFRHPHHTASAPALVGGGSQPKPGEISLAHRGVLFLDELPEFSRPVLEVLREPLENGEV
RIARAQAQAVFPCQFQLVAAMNPCPCGYFGDGRGRCRCTSDQVRRYRMRLSGPLLDRIDMHVPVRGIHADQLRGESKEET
SAEVLQRVIEARQRALARQGKTNQALSAKELDQLCPLTEDQHAYLSAAMDKLGLSIRAWHRIIRVARTLADLAKSEQVQD
GHIAEAVNYRRLDRPMA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=109915 ACGHTT_RS19175 WP_390592615.1 4302061..4303554(+) (comM) [Simiduia litorea strain KMM 9504]
ATGTCACTGGCTATTGTTCACTCTCGCGCCCGCTCGGGGATTCAAGCACCCGTGGTTGAAGTTGAGGTTCATCTATCCAA
CGGGCTACCGGGTTTAGCCATTGTTGGCCTGCCGGAAACCGCCGTTAAAGAAAGCAAAGATAGAGTGCGCAGTGCGCTCA
TCAACAGCCATTTCGAATTTCCCAGCCGTCGCATCACCATCAACCTCGCTCCGGCCGACTTACCCAAAGAAGGCGGTCGC
TTCGATTTACCCATTGCCCTAGGTATCCTCGCCGCATCGGGTCAAATTCCCGCACAAGCGCTTGCCAATGTAGAGTGCGT
TGGCGAACTGGCACTGTCTGGCGAGCTAAGGCCAATTTCAGCCTGTCTGCCCGCTGTTATCGCCAGCCATGCCGAAGGTA
GGCAACTGATACTGCCAGCCGACAATAGCCACGAGGCAGCGCTGTATAGCCAAGCAAAACCCTTGATGGCGGGCAACCTA
CTGGAAGTGTGCGCTCACTTACACGGTCGCAGCCAGCTCAATCCCTGCACCTCAAGGCCGGCTGAGCCAATACCCAATAG
CCAAGATTTAGCGGATGTACGCGGCCAGCCTCAAGCCCGGCGGGCCTTGGAAATTGCTGCTGCTGGACAACACAATTTAT
TGTTCTACGGTCCTCCCGGTACCGGTAAAACCCTGCTCGCAAGTCGCTTAAACACGCTTCTACCGCCCCTGAGTGACGAA
GAAGCCTTGGACATCGCCTTAATTCACTCGGTGGCTGGCGCGCCCCATCGCTGGCGCGAGCGCCCTTTCCGCCACCCCCA
TCACACCGCCTCGGCGCCCGCATTAGTCGGCGGTGGCTCACAGCCTAAGCCCGGTGAAATCTCCCTCGCGCACCGCGGCG
TATTGTTTCTCGACGAGCTACCGGAGTTTTCCCGCCCGGTCCTAGAAGTTCTGCGCGAGCCGCTTGAAAATGGGGAGGTA
CGCATCGCTAGAGCACAGGCGCAGGCGGTGTTTCCCTGTCAATTTCAACTCGTCGCAGCCATGAACCCTTGTCCCTGCGG
CTATTTCGGCGATGGTAGAGGTCGCTGCCGTTGTACATCTGATCAGGTGCGGCGCTATCGCATGCGCTTATCAGGTCCGT
TATTAGACCGGATCGATATGCATGTACCGGTGCGGGGTATACACGCAGACCAGCTTAGAGGTGAGAGTAAAGAAGAAACC
AGCGCCGAGGTTTTACAGCGCGTTATCGAGGCGCGTCAACGCGCGTTAGCGCGGCAAGGGAAAACCAATCAAGCCTTGAG
CGCCAAAGAACTCGATCAACTCTGCCCATTAACCGAAGACCAACACGCCTACCTCTCGGCCGCGATGGATAAACTTGGGC
TCTCTATTCGAGCTTGGCACCGTATTATTCGAGTCGCGCGCACACTAGCCGATCTGGCCAAGAGCGAGCAAGTGCAGGAC
GGACATATCGCCGAAGCCGTTAACTACCGACGCTTGGACAGGCCTATGGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(398-490)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.513

100

0.567
  comM Vibrio cholerae strain A1552

56.513

100

0.567
  comM Glaesserella parasuis strain SC1401

53.571

100

0.543
  comM Haemophilus influenzae Rd KW20

52.684

100

0.533
  comM Legionella pneumophila str. Paris

51.71

100

0.517
  comM Legionella pneumophila strain ERS1305867

51.71

100

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.469

Multiple sequence alignment