Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACM6AK_RS05310 | Genome accession | NZ_CP181109 |
| Coordinates | 1101304..1101774 (+) | Length | 156 a.a. |
| NCBI ID | WP_086038227.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain AG21-0611 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1085852..1134550 | 1101304..1101774 | within | 0 |
Gene organization within MGE regions
Location: 1085852..1134550
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM6AK_RS05185 (ACM6AK_05185) | - | 1085852..1086778 (-) | 927 | WP_000757575.1 | glycerophosphodiester phosphodiesterase | - |
| ACM6AK_RS05190 (ACM6AK_05190) | - | 1087017..1087271 (+) | 255 | WP_001049150.1 | YlbG family protein | - |
| ACM6AK_RS05195 (ACM6AK_05195) | - | 1087274..1087663 (-) | 390 | WP_000814565.1 | hypothetical protein | - |
| ACM6AK_RS05200 (ACM6AK_05200) | rsmD | 1087733..1088275 (+) | 543 | WP_001263796.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| ACM6AK_RS05205 (ACM6AK_05205) | coaD | 1088277..1088759 (+) | 483 | WP_000401377.1 | pantetheine-phosphate adenylyltransferase | - |
| ACM6AK_RS05210 (ACM6AK_05210) | - | 1088821..1089960 (-) | 1140 | WP_000843611.1 | nucleotidyltransferase | - |
| ACM6AK_RS05215 (ACM6AK_05215) | - | 1090087..1090644 (+) | 558 | WP_000872158.1 | YceD family protein | - |
| ACM6AK_RS05220 (ACM6AK_05220) | rpmF | 1090724..1090897 (+) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| ACM6AK_RS05225 (ACM6AK_05225) | - | 1091014..1092399 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| ACM6AK_RS05230 (ACM6AK_05230) | - | 1092606..1093286 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ACM6AK_RS05235 (ACM6AK_05235) | - | 1093470..1093931 (-) | 462 | WP_000525011.1 | hypothetical protein | - |
| ACM6AK_RS05240 (ACM6AK_05240) | - | 1093944..1094267 (-) | 324 | WP_001260487.1 | helix-turn-helix domain-containing protein | - |
| ACM6AK_RS05245 (ACM6AK_05245) | - | 1094431..1094679 (+) | 249 | WP_000272859.1 | helix-turn-helix domain-containing protein | - |
| ACM6AK_RS05250 (ACM6AK_05250) | - | 1094692..1095135 (+) | 444 | WP_000435355.1 | hypothetical protein | - |
| ACM6AK_RS05255 (ACM6AK_05255) | - | 1095150..1095329 (+) | 180 | WP_000393082.1 | hypothetical protein | - |
| ACM6AK_RS05260 (ACM6AK_05260) | - | 1095319..1095558 (-) | 240 | WP_000438628.1 | hypothetical protein | - |
| ACM6AK_RS05265 (ACM6AK_05265) | - | 1095615..1096358 (+) | 744 | WP_033861543.1 | phage antirepressor KilAC domain-containing protein | - |
| ACM6AK_RS05270 (ACM6AK_05270) | - | 1096534..1096764 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| ACM6AK_RS05275 (ACM6AK_05275) | - | 1096823..1096951 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| ACM6AK_RS05280 (ACM6AK_05280) | - | 1096944..1097105 (+) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| ACM6AK_RS05285 (ACM6AK_05285) | - | 1097199..1097459 (+) | 261 | WP_000291091.1 | DUF1108 family protein | - |
| ACM6AK_RS05290 (ACM6AK_05290) | - | 1097468..1097731 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ACM6AK_RS05295 (ACM6AK_05295) | - | 1097728..1099683 (+) | 1956 | WP_049880126.1 | AAA family ATPase | - |
| ACM6AK_RS05300 (ACM6AK_05300) | - | 1099685..1100605 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| ACM6AK_RS05305 (ACM6AK_05305) | - | 1100686..1101303 (+) | 618 | WP_077517322.1 | MBL fold metallo-hydrolase | - |
| ACM6AK_RS05310 (ACM6AK_05310) | ssbA | 1101304..1101774 (+) | 471 | WP_086038227.1 | single-stranded DNA-binding protein | Machinery gene |
| ACM6AK_RS05315 (ACM6AK_05315) | - | 1101804..1102688 (+) | 885 | WP_016047539.1 | DnaD domain protein | - |
| ACM6AK_RS05320 (ACM6AK_05320) | - | 1102695..1102913 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| ACM6AK_RS05325 (ACM6AK_05325) | - | 1102922..1103326 (+) | 405 | WP_029052043.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACM6AK_RS05330 (ACM6AK_05330) | - | 1103339..1103707 (+) | 369 | WP_000101275.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACM6AK_RS05335 (ACM6AK_05335) | - | 1103711..1103953 (+) | 243 | WP_031833133.1 | SAV1978 family virulence-associated passenger protein | - |
| ACM6AK_RS05340 (ACM6AK_05340) | - | 1103966..1104370 (+) | 405 | WP_001560892.1 | hypothetical protein | - |
| ACM6AK_RS05345 (ACM6AK_05345) | - | 1104367..1104714 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| ACM6AK_RS05350 (ACM6AK_05350) | - | 1104711..1105019 (+) | 309 | WP_031891531.1 | hypothetical protein | - |
| ACM6AK_RS05355 (ACM6AK_05355) | - | 1105012..1105260 (+) | 249 | WP_001065062.1 | DUF1024 family protein | - |
| ACM6AK_RS05360 (ACM6AK_05360) | - | 1105253..1105783 (+) | 531 | WP_000185662.1 | dUTPase | - |
| ACM6AK_RS05365 (ACM6AK_05365) | - | 1105820..1106026 (+) | 207 | WP_016028256.1 | DUF1381 domain-containing protein | - |
| ACM6AK_RS05370 (ACM6AK_05370) | rinB | 1106023..1106196 (+) | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| ACM6AK_RS05375 (ACM6AK_05375) | - | 1106197..1106559 (+) | 363 | WP_000383791.1 | hypothetical protein | - |
| ACM6AK_RS05380 (ACM6AK_05380) | - | 1106560..1106706 (+) | 147 | WP_000989961.1 | hypothetical protein | - |
| ACM6AK_RS05385 (ACM6AK_05385) | - | 1106721..1107140 (+) | 420 | WP_000058634.1 | transcriptional regulator | - |
| ACM6AK_RS05390 (ACM6AK_05390) | - | 1107327..1107767 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| ACM6AK_RS05395 (ACM6AK_05395) | - | 1107754..1109031 (+) | 1278 | WP_000169945.1 | PBSX family phage terminase large subunit | - |
| ACM6AK_RS05400 (ACM6AK_05400) | - | 1109042..1110580 (+) | 1539 | WP_031766723.1 | phage portal protein | - |
| ACM6AK_RS05405 (ACM6AK_05405) | - | 1110587..1111582 (+) | 996 | WP_001133044.1 | minor capsid protein | - |
| ACM6AK_RS05410 (ACM6AK_05410) | - | 1111655..1111825 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| ACM6AK_RS05415 (ACM6AK_05415) | - | 1111853..1111940 (+) | 88 | Protein_1059 | hypothetical protein | - |
| ACM6AK_RS05420 (ACM6AK_05420) | - | 1111934..1112554 (+) | 621 | WP_000392151.1 | DUF4355 domain-containing protein | - |
| ACM6AK_RS05425 (ACM6AK_05425) | - | 1112568..1113542 (+) | 975 | WP_000438511.1 | phage major capsid protein | - |
| ACM6AK_RS05430 (ACM6AK_05430) | - | 1113564..1113851 (+) | 288 | WP_001114086.1 | hypothetical protein | - |
| ACM6AK_RS05435 (ACM6AK_05435) | - | 1113860..1114192 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| ACM6AK_RS05440 (ACM6AK_05440) | - | 1114189..1114491 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| ACM6AK_RS05445 (ACM6AK_05445) | - | 1114491..1114838 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ACM6AK_RS05450 (ACM6AK_05450) | - | 1114850..1115233 (+) | 384 | WP_000188643.1 | hypothetical protein | - |
| ACM6AK_RS05455 (ACM6AK_05455) | - | 1115252..1115833 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| ACM6AK_RS05460 (ACM6AK_05460) | - | 1115895..1116260 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| ACM6AK_RS05465 (ACM6AK_05465) | - | 1116290..1116634 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| ACM6AK_RS05470 (ACM6AK_05470) | - | 1116651..1120115 (+) | 3465 | WP_086036927.1 | hypothetical protein | - |
| ACM6AK_RS05475 (ACM6AK_05475) | - | 1120128..1121075 (+) | 948 | WP_000350687.1 | phage tail family protein | - |
| ACM6AK_RS05480 (ACM6AK_05480) | - | 1121084..1122985 (+) | 1902 | WP_000156416.1 | SGNH/GDSL hydrolase family protein | - |
| ACM6AK_RS05485 (ACM6AK_05485) | - | 1123000..1124910 (+) | 1911 | WP_000066423.1 | hypothetical protein | - |
| ACM6AK_RS05490 (ACM6AK_05490) | - | 1124910..1126733 (+) | 1824 | WP_000259596.1 | phage baseplate upper protein | - |
| ACM6AK_RS05495 (ACM6AK_05495) | - | 1126733..1127110 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| ACM6AK_RS05500 (ACM6AK_05500) | - | 1127114..1127287 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| ACM6AK_RS05505 (ACM6AK_05505) | - | 1127328..1127627 (+) | 300 | WP_000466767.1 | DUF2951 domain-containing protein | - |
| ACM6AK_RS05510 (ACM6AK_05510) | - | 1127764..1129656 (+) | 1893 | WP_086036928.1 | glucosaminidase domain-containing protein | - |
| ACM6AK_RS05515 (ACM6AK_05515) | - | 1129669..1130907 (+) | 1239 | WP_000276662.1 | BppU family phage baseplate upper protein | - |
| ACM6AK_RS05520 (ACM6AK_05520) | - | 1130913..1131308 (+) | 396 | WP_000398868.1 | hypothetical protein | - |
| ACM6AK_RS05525 (ACM6AK_05525) | - | 1131364..1131639 (+) | 276 | WP_000351119.1 | phage holin | - |
| ACM6AK_RS05530 (ACM6AK_05530) | - | 1131626..1133038 (+) | 1413 | WP_001141517.1 | N-acetylmuramoyl-L-alanine amidase | - |
| ACM6AK_RS05535 (ACM6AK_05535) | - | 1133098..1133655 (-) | 558 | WP_001035620.1 | DUF4888 domain-containing protein | - |
| ACM6AK_RS05540 (ACM6AK_05540) | - | 1134030..1134182 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| ACM6AK_RS05545 (ACM6AK_05545) | - | 1134253..1134363 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| ACM6AK_RS05550 (ACM6AK_05550) | - | 1134365..1134550 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.56 Da Isoelectric Point: 4.9628
>NTDB_id=1098386 ACM6AK_RS05310 WP_086038227.1 1101304..1101774(+) (ssbA) [Staphylococcus aureus strain AG21-0611]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1098386 ACM6AK_RS05310 WP_086038227.1 1101304..1101774(+) (ssbA) [Staphylococcus aureus strain AG21-0611]
ATGATAAATAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGATAAATAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.577 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |