Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACM6AM_RS05460 | Genome accession | NZ_CP181104 |
| Coordinates | 1120513..1120983 (+) | Length | 156 a.a. |
| NCBI ID | WP_086038227.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain AG21-0613 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1105061..1153759 | 1120513..1120983 | within | 0 |
Gene organization within MGE regions
Location: 1105061..1153759
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM6AM_RS05340 (ACM6AM_05340) | - | 1105061..1105987 (-) | 927 | WP_000757575.1 | glycerophosphodiester phosphodiesterase | - |
| ACM6AM_RS05345 (ACM6AM_05345) | - | 1106226..1106480 (+) | 255 | WP_001049150.1 | YlbG family protein | - |
| ACM6AM_RS05350 (ACM6AM_05350) | - | 1106483..1106872 (-) | 390 | WP_000814565.1 | hypothetical protein | - |
| ACM6AM_RS05355 (ACM6AM_05355) | rsmD | 1106942..1107484 (+) | 543 | WP_001263796.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| ACM6AM_RS05360 (ACM6AM_05360) | coaD | 1107486..1107968 (+) | 483 | WP_000401377.1 | pantetheine-phosphate adenylyltransferase | - |
| ACM6AM_RS05365 (ACM6AM_05365) | - | 1108030..1109169 (-) | 1140 | WP_000843611.1 | nucleotidyltransferase | - |
| ACM6AM_RS05370 (ACM6AM_05370) | - | 1109296..1109853 (+) | 558 | WP_000872158.1 | YceD family protein | - |
| ACM6AM_RS05375 (ACM6AM_05375) | rpmF | 1109933..1110106 (+) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| ACM6AM_RS05380 (ACM6AM_05380) | - | 1110223..1111608 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| ACM6AM_RS05385 (ACM6AM_05385) | - | 1111815..1112495 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ACM6AM_RS05390 (ACM6AM_05390) | - | 1112679..1113140 (-) | 462 | WP_000525011.1 | hypothetical protein | - |
| ACM6AM_RS05395 (ACM6AM_05395) | - | 1113153..1113476 (-) | 324 | WP_001260487.1 | helix-turn-helix domain-containing protein | - |
| ACM6AM_RS05400 (ACM6AM_05400) | - | 1113640..1113888 (+) | 249 | WP_000272859.1 | helix-turn-helix domain-containing protein | - |
| ACM6AM_RS05405 (ACM6AM_05405) | - | 1113901..1114344 (+) | 444 | WP_000435355.1 | hypothetical protein | - |
| ACM6AM_RS05410 (ACM6AM_05410) | - | 1114359..1114538 (+) | 180 | WP_000393082.1 | hypothetical protein | - |
| ACM6AM_RS05415 (ACM6AM_05415) | - | 1114528..1114767 (-) | 240 | WP_086038194.1 | hypothetical protein | - |
| ACM6AM_RS05420 (ACM6AM_05420) | - | 1114824..1115567 (+) | 744 | WP_033861543.1 | phage antirepressor KilAC domain-containing protein | - |
| ACM6AM_RS05425 (ACM6AM_05425) | - | 1115743..1115973 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| ACM6AM_RS05430 (ACM6AM_05435) | - | 1116153..1116314 (+) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| ACM6AM_RS05435 (ACM6AM_05440) | - | 1116408..1116668 (+) | 261 | WP_000291091.1 | DUF1108 family protein | - |
| ACM6AM_RS05440 (ACM6AM_05445) | - | 1116677..1116940 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ACM6AM_RS05445 (ACM6AM_05450) | - | 1116937..1118892 (+) | 1956 | WP_192859928.1 | AAA family ATPase | - |
| ACM6AM_RS05450 (ACM6AM_05455) | - | 1118894..1119814 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| ACM6AM_RS05455 (ACM6AM_05460) | - | 1119895..1120512 (+) | 618 | WP_077517322.1 | MBL fold metallo-hydrolase | - |
| ACM6AM_RS05460 (ACM6AM_05465) | ssbA | 1120513..1120983 (+) | 471 | WP_086038227.1 | single-stranded DNA-binding protein | Machinery gene |
| ACM6AM_RS05465 (ACM6AM_05470) | - | 1121013..1121897 (+) | 885 | WP_016047539.1 | DnaD domain protein | - |
| ACM6AM_RS05470 (ACM6AM_05475) | - | 1121904..1122122 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| ACM6AM_RS05475 (ACM6AM_05480) | - | 1122131..1122535 (+) | 405 | WP_029052043.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACM6AM_RS05480 (ACM6AM_05485) | - | 1122548..1122916 (+) | 369 | WP_000101275.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACM6AM_RS05485 (ACM6AM_05490) | - | 1122920..1123162 (+) | 243 | WP_031833133.1 | SAV1978 family virulence-associated passenger protein | - |
| ACM6AM_RS05490 (ACM6AM_05495) | - | 1123175..1123579 (+) | 405 | WP_001560892.1 | hypothetical protein | - |
| ACM6AM_RS05495 (ACM6AM_05500) | - | 1123576..1123923 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| ACM6AM_RS05500 (ACM6AM_05505) | - | 1123920..1124228 (+) | 309 | WP_000144708.1 | hypothetical protein | - |
| ACM6AM_RS05505 (ACM6AM_05510) | - | 1124221..1124469 (+) | 249 | WP_001065062.1 | DUF1024 family protein | - |
| ACM6AM_RS05510 (ACM6AM_05515) | - | 1124462..1124992 (+) | 531 | WP_000185662.1 | dUTPase | - |
| ACM6AM_RS05515 (ACM6AM_05520) | - | 1125029..1125235 (+) | 207 | WP_016028256.1 | DUF1381 domain-containing protein | - |
| ACM6AM_RS05520 (ACM6AM_05525) | rinB | 1125232..1125405 (+) | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| ACM6AM_RS05525 (ACM6AM_05530) | - | 1125406..1125768 (+) | 363 | WP_000383791.1 | hypothetical protein | - |
| ACM6AM_RS05530 (ACM6AM_05535) | - | 1125769..1125915 (+) | 147 | WP_000989961.1 | hypothetical protein | - |
| ACM6AM_RS05535 (ACM6AM_05540) | - | 1125930..1126349 (+) | 420 | WP_000058634.1 | transcriptional regulator | - |
| ACM6AM_RS05540 (ACM6AM_05545) | - | 1126536..1126976 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| ACM6AM_RS05545 (ACM6AM_05550) | - | 1126963..1128240 (+) | 1278 | WP_000169945.1 | PBSX family phage terminase large subunit | - |
| ACM6AM_RS05550 (ACM6AM_05555) | - | 1128251..1129789 (+) | 1539 | WP_031906499.1 | phage portal protein | - |
| ACM6AM_RS05555 (ACM6AM_05560) | - | 1129796..1130791 (+) | 996 | WP_001133044.1 | minor capsid protein | - |
| ACM6AM_RS05560 (ACM6AM_05565) | - | 1130864..1131034 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| ACM6AM_RS05565 (ACM6AM_05570) | - | 1131062..1131149 (+) | 88 | Protein_1089 | hypothetical protein | - |
| ACM6AM_RS05570 (ACM6AM_05575) | - | 1131143..1131763 (+) | 621 | WP_000392151.1 | DUF4355 domain-containing protein | - |
| ACM6AM_RS05575 (ACM6AM_05580) | - | 1131777..1132751 (+) | 975 | WP_000438511.1 | phage major capsid protein | - |
| ACM6AM_RS05580 (ACM6AM_05585) | - | 1132773..1133060 (+) | 288 | WP_001114086.1 | hypothetical protein | - |
| ACM6AM_RS05585 (ACM6AM_05590) | - | 1133069..1133401 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| ACM6AM_RS05590 (ACM6AM_05595) | - | 1133398..1133700 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| ACM6AM_RS05595 (ACM6AM_05600) | - | 1133700..1134047 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ACM6AM_RS05600 (ACM6AM_05605) | - | 1134059..1134442 (+) | 384 | WP_000188643.1 | hypothetical protein | - |
| ACM6AM_RS05605 (ACM6AM_05610) | - | 1134461..1135042 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| ACM6AM_RS05610 (ACM6AM_05615) | - | 1135104..1135469 (+) | 366 | WP_001629672.1 | tail assembly chaperone | - |
| ACM6AM_RS05615 (ACM6AM_05620) | - | 1135499..1135843 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| ACM6AM_RS05620 (ACM6AM_05625) | - | 1135860..1139324 (+) | 3465 | WP_086038129.1 | hypothetical protein | - |
| ACM6AM_RS05625 (ACM6AM_05630) | - | 1139337..1140284 (+) | 948 | WP_000350687.1 | phage tail family protein | - |
| ACM6AM_RS05630 (ACM6AM_05635) | - | 1140293..1142194 (+) | 1902 | WP_000156416.1 | SGNH/GDSL hydrolase family protein | - |
| ACM6AM_RS05635 (ACM6AM_05640) | - | 1142209..1144119 (+) | 1911 | WP_000066423.1 | hypothetical protein | - |
| ACM6AM_RS05640 (ACM6AM_05645) | - | 1144119..1145942 (+) | 1824 | WP_000259596.1 | phage baseplate upper protein | - |
| ACM6AM_RS05645 (ACM6AM_05650) | - | 1145942..1146319 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| ACM6AM_RS05650 (ACM6AM_05655) | - | 1146323..1146496 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| ACM6AM_RS05655 (ACM6AM_05660) | - | 1146537..1146836 (+) | 300 | WP_000466767.1 | DUF2951 domain-containing protein | - |
| ACM6AM_RS05660 (ACM6AM_05665) | - | 1146973..1148865 (+) | 1893 | WP_086036928.1 | glucosaminidase domain-containing protein | - |
| ACM6AM_RS05665 (ACM6AM_05670) | - | 1148878..1150116 (+) | 1239 | WP_000276662.1 | BppU family phage baseplate upper protein | - |
| ACM6AM_RS05670 (ACM6AM_05675) | - | 1150122..1150517 (+) | 396 | WP_000398868.1 | hypothetical protein | - |
| ACM6AM_RS05675 (ACM6AM_05680) | - | 1150573..1150848 (+) | 276 | WP_000351119.1 | phage holin | - |
| ACM6AM_RS05680 (ACM6AM_05685) | - | 1150835..1152247 (+) | 1413 | WP_001141517.1 | N-acetylmuramoyl-L-alanine amidase | - |
| ACM6AM_RS05685 (ACM6AM_05690) | - | 1152307..1152864 (-) | 558 | WP_001035620.1 | DUF4888 domain-containing protein | - |
| ACM6AM_RS05690 (ACM6AM_05695) | - | 1153239..1153391 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| ACM6AM_RS05695 (ACM6AM_05700) | - | 1153462..1153572 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| ACM6AM_RS05700 (ACM6AM_05705) | - | 1153574..1153759 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.56 Da Isoelectric Point: 4.9628
>NTDB_id=1098301 ACM6AM_RS05460 WP_086038227.1 1120513..1120983(+) (ssbA) [Staphylococcus aureus strain AG21-0613]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1098301 ACM6AM_RS05460 WP_086038227.1 1120513..1120983(+) (ssbA) [Staphylococcus aureus strain AG21-0613]
ATGATAAATAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGATAAATAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.577 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |