Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACM6AN_RS05795 | Genome accession | NZ_CP181102 |
| Coordinates | 1163906..1164376 (+) | Length | 156 a.a. |
| NCBI ID | WP_024937184.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain AG21-0614 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1153739..1195788 | 1163906..1164376 | within | 0 |
Gene organization within MGE regions
Location: 1153739..1195788
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM6AN_RS05710 (ACM6AN_05710) | - | 1153739..1155124 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| ACM6AN_RS05715 (ACM6AN_05715) | - | 1155331..1156011 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ACM6AN_RS05720 (ACM6AN_05720) | - | 1156047..1156766 (-) | 720 | WP_000358220.1 | XRE family transcriptional regulator | - |
| ACM6AN_RS05725 (ACM6AN_05725) | - | 1156908..1157126 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| ACM6AN_RS05730 (ACM6AN_05730) | - | 1157141..1157449 (+) | 309 | WP_001153965.1 | hypothetical protein | - |
| ACM6AN_RS05735 (ACM6AN_05735) | - | 1157606..1158394 (+) | 789 | WP_001148571.1 | phage antirepressor | - |
| ACM6AN_RS05740 (ACM6AN_05740) | - | 1158411..1158605 (+) | 195 | WP_000390105.1 | hypothetical protein | - |
| ACM6AN_RS05745 (ACM6AN_05745) | - | 1158658..1158834 (+) | 177 | WP_001094935.1 | hypothetical protein | - |
| ACM6AN_RS05750 (ACM6AN_05750) | - | 1158809..1159039 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| ACM6AN_RS05755 (ACM6AN_05755) | - | 1159098..1159226 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| ACM6AN_RS05760 (ACM6AN_05760) | - | 1159219..1159386 (+) | 168 | WP_001285957.1 | DUF1270 domain-containing protein | - |
| ACM6AN_RS05765 (ACM6AN_05765) | - | 1159387..1159707 (+) | 321 | WP_000219666.1 | hypothetical protein | - |
| ACM6AN_RS05770 (ACM6AN_05770) | - | 1159801..1160061 (+) | 261 | WP_000291075.1 | DUF1108 family protein | - |
| ACM6AN_RS05775 (ACM6AN_05775) | - | 1160070..1160333 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ACM6AN_RS05780 (ACM6AN_05780) | - | 1160342..1162285 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| ACM6AN_RS05785 (ACM6AN_05785) | - | 1162287..1163207 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| ACM6AN_RS05790 (ACM6AN_05790) | - | 1163288..1163905 (+) | 618 | WP_072460574.1 | MBL fold metallo-hydrolase | - |
| ACM6AN_RS05795 (ACM6AN_05795) | ssbA | 1163906..1164376 (+) | 471 | WP_024937184.1 | single-stranded DNA-binding protein | Machinery gene |
| ACM6AN_RS05800 (ACM6AN_05800) | - | 1164406..1165290 (+) | 885 | WP_031833657.1 | DnaD domain protein | - |
| ACM6AN_RS05805 (ACM6AN_05805) | - | 1165297..1165515 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| ACM6AN_RS05810 (ACM6AN_05810) | - | 1165524..1165928 (+) | 405 | WP_416152546.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACM6AN_RS05815 (ACM6AN_05815) | - | 1165941..1166309 (+) | 369 | WP_001140280.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACM6AN_RS05820 (ACM6AN_05820) | - | 1166313..1166555 (+) | 243 | WP_000131382.1 | SAV1978 family virulence-associated passenger protein | - |
| ACM6AN_RS05825 (ACM6AN_05825) | - | 1166596..1166844 (+) | 249 | WP_001065072.1 | DUF1024 family protein | - |
| ACM6AN_RS05830 (ACM6AN_05830) | - | 1166837..1167373 (+) | 537 | WP_001562696.1 | dUTPase | - |
| ACM6AN_RS05835 (ACM6AN_05835) | - | 1167410..1167655 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| ACM6AN_RS05840 (ACM6AN_05840) | - | 1167652..1167852 (+) | 201 | WP_000195808.1 | DUF1381 domain-containing protein | - |
| ACM6AN_RS05845 (ACM6AN_05845) | - | 1167951..1168187 (+) | 237 | WP_000608278.1 | hypothetical protein | - |
| ACM6AN_RS05850 (ACM6AN_05850) | - | 1168177..1168566 (+) | 390 | WP_001662395.1 | hypothetical protein | - |
| ACM6AN_RS05855 (ACM6AN_05855) | rinB | 1168563..1168736 (+) | 174 | WP_000595270.1 | transcriptional activator RinB | - |
| ACM6AN_RS05860 (ACM6AN_05860) | - | 1168737..1169102 (+) | 366 | WP_000989954.1 | hypothetical protein | - |
| ACM6AN_RS05865 (ACM6AN_05865) | - | 1169103..1169249 (+) | 147 | WP_000989960.1 | hypothetical protein | - |
| ACM6AN_RS05870 (ACM6AN_05870) | - | 1169273..1169695 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| ACM6AN_RS05875 (ACM6AN_05875) | - | 1169882..1170322 (+) | 441 | WP_001003271.1 | terminase small subunit | - |
| ACM6AN_RS05880 (ACM6AN_05880) | - | 1170309..1171586 (+) | 1278 | WP_000169946.1 | PBSX family phage terminase large subunit | - |
| ACM6AN_RS05885 (ACM6AN_05885) | - | 1171597..1173135 (+) | 1539 | WP_000909970.1 | phage portal protein | - |
| ACM6AN_RS05890 (ACM6AN_05890) | - | 1173142..1174137 (+) | 996 | WP_001133044.1 | minor capsid protein | - |
| ACM6AN_RS05895 (ACM6AN_05895) | - | 1174210..1174380 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| ACM6AN_RS05900 (ACM6AN_05900) | - | 1174408..1174495 (+) | 88 | Protein_1154 | hypothetical protein | - |
| ACM6AN_RS05905 (ACM6AN_05905) | - | 1174489..1175109 (+) | 621 | WP_000392151.1 | DUF4355 domain-containing protein | - |
| ACM6AN_RS05910 (ACM6AN_05910) | - | 1175123..1176097 (+) | 975 | WP_000438511.1 | phage major capsid protein | - |
| ACM6AN_RS05915 (ACM6AN_05915) | - | 1176119..1176406 (+) | 288 | WP_001114086.1 | hypothetical protein | - |
| ACM6AN_RS05920 (ACM6AN_05920) | - | 1176415..1176747 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| ACM6AN_RS05925 (ACM6AN_05925) | - | 1176744..1177046 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| ACM6AN_RS05930 (ACM6AN_05930) | - | 1177046..1177393 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ACM6AN_RS05935 (ACM6AN_05935) | - | 1177405..1177788 (+) | 384 | WP_000188643.1 | hypothetical protein | - |
| ACM6AN_RS05940 (ACM6AN_05940) | - | 1177807..1178388 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| ACM6AN_RS05945 (ACM6AN_05945) | - | 1178450..1178815 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| ACM6AN_RS05950 (ACM6AN_05950) | - | 1178845..1179189 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| ACM6AN_RS05955 (ACM6AN_05955) | - | 1179206..1182670 (+) | 3465 | WP_416152547.1 | hypothetical protein | - |
| ACM6AN_RS05960 (ACM6AN_05960) | - | 1182683..1183630 (+) | 948 | WP_000350687.1 | phage tail family protein | - |
| ACM6AN_RS05965 (ACM6AN_05965) | - | 1183639..1185540 (+) | 1902 | WP_416152548.1 | SGNH/GDSL hydrolase family protein | - |
| ACM6AN_RS05970 (ACM6AN_05970) | - | 1185555..1187465 (+) | 1911 | WP_000066423.1 | hypothetical protein | - |
| ACM6AN_RS05975 (ACM6AN_05975) | - | 1187465..1189288 (+) | 1824 | WP_000259597.1 | phage baseplate upper protein | - |
| ACM6AN_RS05980 (ACM6AN_05980) | - | 1189288..1189665 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| ACM6AN_RS05985 (ACM6AN_05985) | - | 1189669..1189842 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| ACM6AN_RS05990 (ACM6AN_05990) | - | 1189883..1190182 (+) | 300 | WP_000466770.1 | DUF2951 domain-containing protein | - |
| ACM6AN_RS05995 (ACM6AN_05995) | - | 1190319..1192217 (+) | 1899 | WP_000524022.1 | glucosaminidase domain-containing protein | - |
| ACM6AN_RS06000 (ACM6AN_06000) | - | 1192230..1193468 (+) | 1239 | WP_000276662.1 | BppU family phage baseplate upper protein | - |
| ACM6AN_RS06005 (ACM6AN_06005) | - | 1193474..1193869 (+) | 396 | WP_000398868.1 | hypothetical protein | - |
| ACM6AN_RS06010 (ACM6AN_06010) | - | 1193925..1194362 (+) | 438 | WP_000354121.1 | phage holin | - |
| ACM6AN_RS06015 (ACM6AN_06015) | - | 1194343..1195788 (+) | 1446 | WP_001148123.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.56 Da Isoelectric Point: 4.9628
>NTDB_id=1098258 ACM6AN_RS05795 WP_024937184.1 1163906..1164376(+) (ssbA) [Staphylococcus aureus strain AG21-0614]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1098258 ACM6AN_RS05795 WP_024937184.1 1163906..1164376(+) (ssbA) [Staphylococcus aureus strain AG21-0614]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.497 |
100 |
0.641 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |