Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACM26W_RS20210 Genome accession   NZ_CP181044
Coordinates   4295477..4296979 (+) Length   500 a.a.
NCBI ID   WP_416138745.1    Uniprot ID   -
Organism   Halomonas sp. HK25     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4290477..4301979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM26W_RS20180 (ACM26W_20180) - 4290670..4291596 (-) 927 WP_416138740.1 LysR family transcriptional regulator -
  ACM26W_RS20185 (ACM26W_20185) - 4291758..4292534 (+) 777 WP_416138741.1 ferredoxin--NADP reductase -
  ACM26W_RS20190 (ACM26W_20190) glnK 4292698..4293036 (-) 339 WP_416138742.1 P-II family nitrogen regulator -
  ACM26W_RS20195 (ACM26W_20195) - 4293184..4294434 (-) 1251 WP_416138743.1 ammonium transporter -
  ACM26W_RS20200 (ACM26W_20200) - 4294460..4294798 (-) 339 WP_253447610.1 P-II family nitrogen regulator -
  ACM26W_RS20205 (ACM26W_20205) - 4295078..4295410 (+) 333 WP_416138744.1 accessory factor UbiK family protein -
  ACM26W_RS20210 (ACM26W_20210) comM 4295477..4296979 (+) 1503 WP_416138745.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACM26W_RS20215 (ACM26W_20215) - 4296988..4297482 (-) 495 WP_416138746.1 hypothetical protein -
  ACM26W_RS20220 (ACM26W_20220) - 4297479..4298465 (-) 987 WP_416138747.1 alpha/beta hydrolase -
  ACM26W_RS20225 (ACM26W_20225) - 4298700..4300886 (+) 2187 WP_416138748.1 malate synthase G -
  ACM26W_RS20230 (ACM26W_20230) - 4301088..4301501 (+) 414 WP_416138749.1 PaaI family thioesterase -
  ACM26W_RS20235 (ACM26W_20235) - 4301502..4301882 (-) 381 WP_416138750.1 DUF423 domain-containing protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53631.01 Da        Isoelectric Point: 8.2927

>NTDB_id=1097897 ACM26W_RS20210 WP_416138745.1 4295477..4296979(+) (comM) [Halomonas sp. HK25]
MTLAIVHTRAGLGLEAPEVQVEVHLANGLPGMTLVGLPETAVKESRERVRSALVNAGFDYPLRRITLNLAPADLPKEGGR
FDLPIALGLLLASGQLPPNALQDTESVGELALDGGLRPISGVLPLAMATRRALRRLIVPRVNADEAALAGDLEVLPADHL
LEVVAHLLGQSPIAPHRLSRPPEASTSLPDLAEVRGQYQARRALEVAAAGSHNLLFSGPPGTGKTMLASRLPGILPPLTE
EEALEVAAVRSVSGLPLAAEWGRRPFRAPHHTASAVALVGGGSKPRPGEISLAHRGVLFLDELPEFSRHVLEVMREPMES
GQIHIARASHQRRFPARFQLVAAMNPCPCGHLGDPRQACHCTAAQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAAIT
GESSAIVRGRVVAARERQLARGALNAHLAGRELEAACDLCVADRAWLAQVLERLRLSARAYHRVLRVALTLADLAGEPKP
AREQLIEAIGYRQLDRLLKG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1097897 ACM26W_RS20210 WP_416138745.1 4295477..4296979(+) (comM) [Halomonas sp. HK25]
ATGACGCTGGCGATTGTCCATACCCGTGCGGGCCTCGGTCTCGAGGCCCCCGAGGTGCAGGTTGAGGTCCACCTGGCCAA
CGGCCTGCCGGGGATGACTCTGGTCGGCCTGCCCGAGACGGCCGTGAAGGAGAGTCGCGAGCGAGTGCGCAGCGCCCTGG
TCAACGCCGGTTTCGACTACCCCTTGCGCCGCATCACCCTCAATCTGGCGCCCGCCGACCTGCCCAAGGAGGGCGGTCGC
TTCGATTTGCCCATCGCCCTGGGGCTACTGCTGGCCTCCGGACAGCTTCCCCCCAATGCCCTGCAGGACACCGAGAGCGT
CGGCGAATTGGCCCTGGACGGTGGCCTGCGCCCGATCTCTGGTGTGCTGCCCCTGGCCATGGCCACTCGTCGTGCCCTGC
GCCGTCTGATCGTGCCCCGGGTCAACGCCGATGAGGCGGCGCTCGCGGGCGACCTCGAGGTGCTGCCCGCCGACCATCTC
CTCGAGGTGGTCGCCCACCTGCTGGGGCAGTCGCCCATCGCTCCCCACCGCCTGTCGCGCCCGCCGGAGGCGTCGACATC
GTTGCCCGACCTCGCCGAGGTGCGCGGCCAATATCAGGCGCGACGCGCCCTGGAGGTGGCTGCCGCTGGGTCACACAATC
TGCTTTTTTCCGGGCCACCGGGCACCGGCAAGACCATGCTCGCCAGCCGCCTGCCGGGCATCCTGCCGCCGCTGACCGAG
GAGGAGGCCCTGGAGGTGGCGGCGGTGCGCTCGGTCAGCGGCCTGCCGCTGGCCGCCGAGTGGGGGCGGCGGCCCTTTCG
GGCGCCGCATCACACGGCCAGCGCCGTGGCCCTGGTCGGGGGTGGCTCGAAACCCCGCCCCGGGGAGATCTCGTTGGCCC
ATCGCGGGGTGCTGTTCCTGGACGAGCTGCCTGAGTTCTCGCGCCATGTGCTGGAGGTCATGCGTGAGCCCATGGAGTCG
GGCCAGATCCATATCGCCCGGGCCAGCCATCAGCGCCGCTTCCCGGCCCGCTTCCAGCTGGTGGCGGCCATGAATCCCTG
CCCCTGCGGTCACCTGGGCGACCCCCGTCAGGCCTGCCACTGCACCGCGGCCCAGATACAGCGCTACCAGGCTCGGCTAT
CCGGGCCTCTGCTCGACCGCATCGACCTGCAGGTGGAGGTGCCGGCACTGCCGCCGGAGCAGCTCACCGCGGCCATCACG
GGGGAGTCCTCGGCGATCGTGCGAGGGCGCGTGGTGGCGGCCCGGGAGCGTCAGCTGGCGCGGGGTGCGCTCAATGCCCA
CCTGGCGGGACGGGAGCTGGAAGCGGCCTGCGATCTGTGCGTCGCCGATCGTGCCTGGCTGGCGCAGGTGCTGGAGCGCC
TCAGGCTCTCGGCGCGGGCCTATCACCGGGTGCTGCGAGTGGCCCTGACCCTGGCCGATCTGGCGGGCGAACCGAAGCCG
GCCCGGGAACAGCTGATCGAGGCAATCGGCTATCGCCAGCTGGATCGATTGCTCAAGGGGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.375

100

0.566
  comM Vibrio cholerae strain A1552

56.375

100

0.566
  comM Haemophilus influenzae Rd KW20

54.348

100

0.55
  comM Glaesserella parasuis strain SC1401

53.635

100

0.546
  comM Legionella pneumophila str. Paris

50.1

100

0.502
  comM Legionella pneumophila strain ERS1305867

50.1

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.441

100

0.482

Multiple sequence alignment