Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACM0O0_RS17700 Genome accession   NZ_CP180689
Coordinates   3776352..3777839 (+) Length   495 a.a.
NCBI ID   WP_416040771.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3771352..3782839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS17675 ribD 3772267..3773352 (-) 1086 WP_416040769.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ACM0O0_RS17680 nrdR 3773368..3773826 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  ACM0O0_RS17685 - 3773990..3775384 (-) 1395 WP_416040770.1 ammonium transporter -
  ACM0O0_RS17690 glnK 3775442..3775780 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  ACM0O0_RS17695 - 3776059..3776286 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  ACM0O0_RS17700 comM 3776352..3777839 (+) 1488 WP_416040771.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACM0O0_RS17705 - 3777836..3779287 (-) 1452 WP_200044475.1 PLP-dependent aminotransferase family protein -
  ACM0O0_RS17710 - 3779399..3780175 (+) 777 WP_016144090.1 aldolase -
  ACM0O0_RS17715 - 3780191..3781069 (+) 879 WP_239937530.1 dihydrodipicolinate synthase family protein -
  ACM0O0_RS17720 - 3781113..3781925 (-) 813 WP_031947143.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54475.57 Da        Isoelectric Point: 7.5208

>NTDB_id=1097484 ACM0O0_RS17700 WP_416040771.1 3776352..3777839(+) (comM) [Acinetobacter lactucae isolate nanjing]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPENCAEDFELIGELALDGYVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGTKSLSLIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQSCLNQALSPKQLEQFAVLDNTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1097484 ACM0O0_RS17700 WP_416040771.1 3776352..3777839(+) (comM) [Acinetobacter lactucae isolate nanjing]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTAAGTCA
AGGCTTGCCTTCTCTTACCATTGTCGGGCTAGCAGAAGCGGCGGTAAGAGAAAGTAAAGATCGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAACGGCTGACCATTAACCTTGCACCAGCAGATTTGCCCAAAGATGGGTCACGT
CTAGATTTACCGATTGCCGTAGGCATTTTAATTGCGTCTGGTCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGTTATGTAAGGCCAGTGTCAGGTACTTTAACTTTGGCCATGGCGTGTCAACAAGCCAAAC
ATAAAATGCTTTTACCTCTCGATAATAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCCGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCACAAAATCGCTATCTTTGATTGAACCTGCAACGACTTCAAACCAAATGCCCTA
TAAATTTGATCTGGCAGATGTGAAAGGTCAGCTACGCCCACGTCGCGCACTAGAAATAGCTGCCGCAGGGGGCCATTCTT
TGCTCTTTAAAGGGCCACCAGGTACAGGTAAGACTTTACTCGCTTCACGCCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAAGAAACGCTTGAAGTTGCGAGTATTTATTCCATTTCAAATACACCGCATACCTTTGGCCAGCGCCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTGGTTGGGGGCGGCTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GTGTGCTCTTTTTAGATGAACTCCCCGAGTTTGATCGCAAAGTATTAGAAGTCTTACGTCAGCCACTTGAATCAAAAGAA
ATTATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCGATGAACCCTTGCCCATG
TGGGTATGCATTTAATCAAGACAGCCGTTGCCAATGTTCACCAGAGAGTATTAAACGTTATCAAAACCGTATATCGGGGC
CGTTACTCGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTACAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGAGTTGTTTAAATCAAGCACT
TTCACCAAAACAACTAGAACAATTTGCTGTTTTGGATAATACGTCGCAACGCATGATTGAAATGGCTCAGCAACGCTTAA
ATCTATCGGCTCGTGCTTATCACCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCTCAAAGCGAGATGATCCAA
AGTCCGCACCTTACAGAAGCGCTCTCCTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

49.699

100

0.501
  comM Haemophilus influenzae Rd KW20

48.898

100

0.493
  comM Legionella pneumophila strain ERS1305867

48.795

100

0.491
  comM Legionella pneumophila str. Paris

48.795

100

0.491
  comM Vibrio campbellii strain DS40M4

48.081

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.471

Multiple sequence alignment