Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACM0O0_RS01650 Genome accession   NZ_CP180689
Coordinates   342391..343200 (+) Length   269 a.a.
NCBI ID   WP_200043398.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337391..348200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS01615 - 337948..338103 (-) 156 WP_014207816.1 hypothetical protein -
  ACM0O0_RS01620 rpoZ 338142..338420 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ACM0O0_RS01625 gmk 338493..339122 (-) 630 WP_002116973.1 guanylate kinase -
  ACM0O0_RS01630 ispH 339245..340195 (+) 951 WP_373358443.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACM0O0_RS01635 fimU 340366..340839 (+) 474 WP_416040975.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACM0O0_RS01640 pilV 340833..341393 (+) 561 WP_373358445.1 type IV pilus modification protein PilV Machinery gene
  ACM0O0_RS01645 pilW 341393..342394 (+) 1002 WP_416040976.1 PilW family protein Machinery gene
  ACM0O0_RS01650 pilX 342391..343200 (+) 810 WP_200043398.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACM0O0_RS01655 pilY1 343212..347066 (+) 3855 WP_416040977.1 PilC/PilY family type IV pilus protein Machinery gene
  ACM0O0_RS01660 pilY2 347077..347559 (+) 483 WP_087089565.1 type IV pilin protein Machinery gene
  ACM0O0_RS01665 pilE 347556..347981 (+) 426 WP_087089564.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28545.44 Da        Isoelectric Point: 7.7238

>NTDB_id=1097451 ACM0O0_RS01650 WP_200043398.1 342391..343200(+) (pilX) [Acinetobacter lactucae isolate nanjing]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSIPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSMQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALAAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1097451 ACM0O0_RS01650 WP_200043398.1 342391..343200(+) (pilX) [Acinetobacter lactucae isolate nanjing]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACTACCTTAACTAATATTACTAATGTGATT
GGGGCGGCGCTGAAAGAGCACGAAAGTAACCCCGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCGGTTGTCGAAGATGGCGGAGTGGCTG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGCCAAGCAGTGGTTACTCAAGTTGCTGTAAGTATTCCAACAGAT
GCTGCTAGCGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTATGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAGCGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.338

100

0.903

Multiple sequence alignment