Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACM0O0_RS01665 Genome accession   NZ_CP180689
Coordinates   347556..347981 (+) Length   141 a.a.
NCBI ID   WP_087089564.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342556..352981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS01655 pilY1 343212..347066 (+) 3855 WP_416040977.1 PilC/PilY family type IV pilus protein Machinery gene
  ACM0O0_RS01660 pilY2 347077..347559 (+) 483 WP_087089565.1 type IV pilin protein Machinery gene
  ACM0O0_RS01665 pilE 347556..347981 (+) 426 WP_087089564.1 type IV pilin protein Machinery gene
  ACM0O0_RS01670 rpsP 348129..348380 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ACM0O0_RS01675 rimM 348400..348948 (+) 549 WP_416040978.1 ribosome maturation factor RimM -
  ACM0O0_RS01680 trmD 348991..349746 (+) 756 WP_057105812.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACM0O0_RS01685 rplS 349966..350334 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  ACM0O0_RS01690 - 350387..351328 (-) 942 WP_082183535.1 lipase family alpha/beta hydrolase -
  ACM0O0_RS01695 - 351444..352478 (-) 1035 WP_416040979.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15112.27 Da        Isoelectric Point: 7.1292

>NTDB_id=1097454 ACM0O0_RS01665 WP_087089564.1 347556..347981(+) (pilE) [Acinetobacter lactucae isolate nanjing]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLEAEKVVHNRYPSNATITSIYGSSVSPQQG
QALYNLAFASITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSAGSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1097454 ACM0O0_RS01665 WP_087089564.1 347556..347981(+) (pilE) [Acinetobacter lactucae isolate nanjing]
ATGAAGAATGGTTTTACCTTAATAGAACTCATGATTGTAGTCGCAATAATTGCAATTTTAGCGGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAAGCAG
AAAAAGTAGTTCACAATCGCTATCCATCGAATGCGACGATTACATCGATTTATGGTTCTAGTGTCAGCCCTCAACAAGGC
CAAGCCCTATATAACTTAGCTTTTGCCAGCATAACTGATTCAAGCTGGGTGTTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCGGATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.106

100

0.851
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511

Multiple sequence alignment