Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ACM0O0_RS01635 Genome accession   NZ_CP180689
Coordinates   340366..340839 (+) Length   157 a.a.
NCBI ID   WP_416040975.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335366..345839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS01610 - 335827..337932 (-) 2106 WP_174748975.1 RelA/SpoT family protein -
  ACM0O0_RS01615 - 337948..338103 (-) 156 WP_014207816.1 hypothetical protein -
  ACM0O0_RS01620 rpoZ 338142..338420 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ACM0O0_RS01625 gmk 338493..339122 (-) 630 WP_002116973.1 guanylate kinase -
  ACM0O0_RS01630 ispH 339245..340195 (+) 951 WP_373358443.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACM0O0_RS01635 fimU 340366..340839 (+) 474 WP_416040975.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACM0O0_RS01640 pilV 340833..341393 (+) 561 WP_373358445.1 type IV pilus modification protein PilV Machinery gene
  ACM0O0_RS01645 pilW 341393..342394 (+) 1002 WP_416040976.1 PilW family protein Machinery gene
  ACM0O0_RS01650 pilX 342391..343200 (+) 810 WP_200043398.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16922.55 Da        Isoelectric Point: 8.5281

>NTDB_id=1097448 ACM0O0_RS01635 WP_416040975.1 340366..340839(+) (fimU) [Acinetobacter lactucae isolate nanjing]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDENQRDLINTLSEAKTQAILGRQDVSINLNSTALNTPT
SFNWKAASNSTLELKNIAANGTQSSSTATTLTFNANGVVTNITQDTLLSICNSKTNKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1097448 ACM0O0_RS01635 WP_416040975.1 340366..340839(+) (fimU) [Acinetobacter lactucae isolate nanjing]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTAGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGCAAACGATTAGATGAAAATCAACGAGACCTGATCAATACTTTGT
CGGAAGCAAAGACTCAAGCGATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCCTTAAATACACCAACT
TCTTTTAATTGGAAAGCTGCTTCCAATAGCACTCTTGAGCTTAAAAATATCGCTGCTAACGGTACACAGAGCTCATCAAC
AGCGACGACTTTAACTTTTAATGCAAATGGAGTGGTAACTAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAACAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

86.624

100

0.866

Multiple sequence alignment