Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACL43R_RS02410 Genome accession   NZ_CP180647
Coordinates   490730..491734 (+) Length   334 a.a.
NCBI ID   WP_416037675.1    Uniprot ID   -
Organism   Lactococcus formosensis strain JAL11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 485730..496734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL43R_RS02390 (ACL43R_02390) - 486112..486816 (+) 705 WP_096368588.1 Bax inhibitor-1/YccA family protein -
  ACL43R_RS02395 (ACL43R_02395) - 486866..487690 (-) 825 WP_165711384.1 HAD family hydrolase -
  ACL43R_RS02400 (ACL43R_02400) - 488053..489474 (+) 1422 WP_017368901.1 NCS2 family permease -
  ACL43R_RS02405 (ACL43R_02405) - 489552..490652 (+) 1101 WP_213432063.1 YdcF family protein -
  ACL43R_RS02410 (ACL43R_02410) coiA 490730..491734 (+) 1005 WP_416037675.1 competence protein CoiA Machinery gene
  ACL43R_RS02415 (ACL43R_02415) pepF 491718..493523 (+) 1806 WP_416037676.1 oligoendopeptidase F Regulator
  ACL43R_RS02420 (ACL43R_02420) - 493523..494206 (+) 684 WP_416037677.1 O-methyltransferase -
  ACL43R_RS02425 (ACL43R_02425) - 494304..495212 (+) 909 WP_416037678.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 40066.98 Da        Isoelectric Point: 8.4066

>NTDB_id=1097149 ACL43R_RS02410 WP_416037675.1 490730..491734(+) (coiA) [Lactococcus formosensis strain JAL11]
MLNALDKDGNTINFFDNKPINPPFYCPACKSSLRLKKGKIKIPHFAHISLQNCDSWSESESAQHLGLKLSLYQWLKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKKTLSSLQKNLLYYSVERGF
YFWELDWDRKKLRLKSLIHQDLKGRLICLTEEFDFFQESLLELLRQPFLKGENLSIDVPEQEELQSFIQKQLYYQVPKWI
KVQEKYYEQGKNLLDLNWKKCYWAPPGLNLLTFDFINERRENFFQVDTSLEKYYHSFYESFQSQEHERLHTPSYYAIIKD
KNKVKNGEWHGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1097149 ACL43R_RS02410 WP_416037675.1 490730..491734(+) (coiA) [Lactococcus formosensis strain JAL11]
ATGTTGAATGCATTGGATAAAGACGGAAACACAATTAATTTCTTTGATAATAAACCCATTAATCCCCCTTTTTATTGCCC
AGCTTGCAAGTCGTCCCTGCGTTTAAAAAAAGGAAAGATAAAAATACCTCACTTTGCGCACATATCTTTACAAAATTGTG
ATTCTTGGAGTGAAAGCGAATCTGCACAACATCTGGGACTAAAACTTAGCTTATACCAATGGCTTAAGGAAAAAGAGAAA
GTAGAGCTAGAAAAGTATGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCCATCGAAATACA
GTGTTCGCCACTCTCTTTACAACGTTTAGAAGAGAGAACGGTAAGCTACAAAGAAAAGGGATATTATGTACTTTGGCTTC
AAGGAAGGGATTTGTGGCTCAAGAAGACCTTATCATCGCTACAAAAAAATTTGCTCTATTATTCAGTAGAGCGAGGTTTT
TACTTTTGGGAGTTAGATTGGGACAGAAAGAAGCTACGTTTGAAATCATTGATTCATCAGGATTTAAAAGGTCGACTGAT
ATGTCTTACGGAAGAGTTTGATTTTTTCCAAGAGAGTCTCTTAGAACTCTTACGTCAGCCTTTTCTTAAAGGAGAAAATC
TTAGTATAGATGTGCCAGAGCAAGAAGAGTTACAGTCTTTTATTCAAAAACAACTGTATTATCAAGTGCCAAAATGGATT
AAAGTGCAAGAAAAATATTATGAACAGGGAAAAAATTTGTTAGACCTCAACTGGAAGAAATGCTACTGGGCACCGCCAGG
ACTAAACTTATTGACCTTTGACTTTATAAACGAAAGAAGAGAAAATTTTTTTCAAGTGGATACTTCCTTAGAAAAATATT
ATCATAGCTTCTACGAAAGTTTTCAGTCACAAGAACACGAAAGACTGCATACACCAAGCTACTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGCATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.829

98.204

0.509
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

41.159

98.204

0.404

Multiple sequence alignment