Detailed information NTG1096565

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACMXYR_RS13640
• Genome accession: NZ_CP180556
• Coordinates: 2869808..2870980 (+)
• Length: 390 a.a.
• NCBI ID: WP_415885756.1
• Uniprot ID: -
• Organism: Neptuniibacter sp. QD29_5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2864808..2875980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYR_RS13620 (ACMXYR_13620)	-	2866128..2866898 (-)	771	WP_415902008.1	metal ABC transporter permease	-
ACMXYR_RS13625 (ACMXYR_13625)	-	2866898..2867797 (-)	900	WP_415902009.1	metal ABC transporter substrate-binding protein	-
ACMXYR_RS13630 (ACMXYR_13630)	-	2867778..2868887 (-)	1110	WP_415889258.1	hypothetical protein	-
ACMXYR_RS13635 (ACMXYR_13635)	-	2869003..2869656 (-)	654	WP_415902010.1	DUF1826 domain-containing protein	-
ACMXYR_RS13640 (ACMXYR_13640)	pilU	2869808..2870980 (+)	1173	WP_415885756.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACMXYR_RS13645 (ACMXYR_13645)	-	2871189..2871572 (+)	384	WP_415902011.1	hypothetical protein	-
ACMXYR_RS13650 (ACMXYR_13650)	-	2871729..2872565 (-)	837	WP_415902012.1	hypothetical protein	-
ACMXYR_RS13655 (ACMXYR_13655)	fadA	2873024..2874199 (-)	1176	WP_415895155.1	acetyl-CoA C-acyltransferase FadA	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43638.72 Da
• Isoelectric Point: 4.9593

>NTDB_id=1096565 ACMXYR_RS13640 WP_415885756.1 2869808..2870980(+) (pilU) [Neptuniibacter sp. QD29_5]
MEFKDYLTILAKRDGSDLYLTTGAPPCAKFEGKLTPLSKEPYKPGEIEAIANSLMDEQQRATFEEELEMNLAYSIPKVAR
YRINIFKQRNQYSLVARNIKADIPKMEDLGLPPVLKDVIMEKRGLVLFVGATGSGKSTSLAALIDHRNRNSGGHIITIED
PIEFVHNHRKSLINQREVGVDTRNFHSALKNALRQAPDVILIGEIRDQETMEQCLTYAETGHLAISTLHANNANQAIDRI
INFFPQARHKQIFHDLALNLKAIISQRLIPTIEGKRCAAIEILLGTSSVQELIMKGDVKEIKEVMSKGSDTTGMQTFDDS
LFKLFDEGKITQDQAIINADSANDMRLRMNLAVVDDKAEKTDAAPEPEQQPFDEDNPLAGIQLLDEDEEV

Nucleotide

• Length: 1173 bp

>NTDB_id=1096565 ACMXYR_RS13640 WP_415885756.1 2869808..2870980(+) (pilU) [Neptuniibacter sp. QD29_5]
ATGGAATTTAAGGATTACCTTACGATTTTGGCGAAACGTGACGGCTCCGACCTCTACCTCACAACTGGAGCCCCACCTTG
TGCAAAGTTTGAAGGTAAATTAACGCCATTAAGTAAAGAGCCTTATAAGCCCGGTGAGATCGAAGCAATCGCAAATTCCT
TAATGGATGAACAGCAACGCGCTACCTTCGAAGAAGAGCTAGAGATGAACTTGGCTTATTCCATTCCGAAAGTAGCTCGC
TACCGGATAAATATATTTAAACAACGTAACCAATACTCACTGGTTGCGCGTAATATCAAAGCCGATATCCCAAAAATGGA
AGACTTGGGCCTACCCCCCGTCCTGAAAGATGTGATCATGGAAAAACGCGGGCTAGTCTTATTTGTAGGTGCTACAGGTT
CCGGTAAATCAACCTCCTTAGCAGCCTTGATTGACCACCGAAACCGTAACAGCGGTGGCCACATCATTACCATTGAAGAC
CCAATTGAGTTTGTCCACAACCACCGAAAATCTCTGATCAACCAACGTGAAGTTGGAGTTGATACTCGTAACTTCCACAG
TGCACTTAAAAACGCTCTACGCCAAGCACCTGATGTAATATTGATCGGTGAGATTCGTGATCAGGAAACTATGGAGCAGT
GCCTGACCTACGCAGAAACTGGTCACTTAGCAATCTCAACACTGCATGCTAACAACGCTAACCAAGCAATTGATCGTATT
ATTAACTTCTTCCCTCAGGCACGGCATAAACAGATCTTCCATGACCTCGCCCTCAACCTCAAAGCAATTATCTCTCAGCG
TCTGATTCCAACCATTGAAGGTAAACGTTGCGCAGCAATTGAGATACTTCTGGGAACCTCCAGTGTTCAAGAGCTAATCA
TGAAAGGTGACGTCAAAGAGATCAAAGAGGTTATGTCTAAAGGCTCTGATACCACCGGCATGCAAACCTTTGATGACTCG
TTATTCAAACTCTTTGATGAAGGCAAAATTACACAAGACCAAGCGATCATCAATGCTGACTCAGCAAACGATATGCGCCT
TCGAATGAACCTAGCAGTCGTTGATGACAAAGCGGAAAAAACCGATGCAGCACCGGAACCCGAGCAACAGCCCTTCGATG
AAGATAATCCACTAGCTGGAATTCAGCTATTGGATGAAGACGAAGAGGTTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	52.603	93.59	0.492
pilU	Acinetobacter baylyi ADP1	51.412	90.769	0.467
pilU	Vibrio cholerae strain A1552	45.938	91.538	0.421
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.507	94.103	0.4
pilT	Pseudomonas aeruginosa PAK	42.388	85.897	0.364