Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMXYR_RS00975 Genome accession   NZ_CP180556
Coordinates   234119..235633 (+) Length   504 a.a.
NCBI ID   WP_415902557.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD29_5     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 229119..240633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYR_RS00950 (ACMXYR_00950) glnK 229612..229950 (-) 339 WP_415883145.1 P-II family nitrogen regulator -
  ACMXYR_RS00955 (ACMXYR_00955) - 230149..231405 (-) 1257 WP_415902553.1 ammonium transporter -
  ACMXYR_RS00960 (ACMXYR_00960) - 231445..231783 (-) 339 WP_415902554.1 P-II family nitrogen regulator -
  ACMXYR_RS00965 (ACMXYR_00965) - 231981..232322 (+) 342 WP_415902555.1 accessory factor UbiK family protein -
  ACMXYR_RS00970 (ACMXYR_00970) - 232361..234007 (+) 1647 WP_415902556.1 diguanylate cyclase domain-containing protein -
  ACMXYR_RS00975 (ACMXYR_00975) comM 234119..235633 (+) 1515 WP_415902557.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMXYR_RS00980 (ACMXYR_00980) - 235642..237360 (-) 1719 WP_415902558.1 EAL domain-containing protein -
  ACMXYR_RS00985 (ACMXYR_00985) rep 237618..239627 (+) 2010 WP_415902559.1 DNA helicase Rep -
  ACMXYR_RS00990 (ACMXYR_00990) - 239688..240104 (-) 417 WP_415902560.1 c-type cytochrome -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54023.11 Da        Isoelectric Point: 7.4032

>NTDB_id=1096552 ACMXYR_RS00975 WP_415902557.1 234119..235633(+) (comM) [Neptuniibacter sp. QD29_5]
MSLAIAYTRAQVGIDAPAVTVEVHLSGGLPSFSIVGLPEAAVKESRERVRSALINSGFEFPQRRITVNLAPADLPKEGGR
YDLAIAVGILAATNQLPAKSLADVELIGELALSGELRPVTGVLPVALACRSEQRHLLLPEMNQNEALMASGLSVLPAGHL
LQICAHLQGSELIPVAQAQIQPFALGASGPDLSDVKGQAQAKRALEVAAAGGHNILLVGPPGSGKSMLANRLPGLLPQMT
EQEALEVAAVYSITQGSSEACLPRKRPFRAPHHTASSVALVGGGGNPKPGEISLAHQGILFLDELPEFSRKVLEVLREPL
ESGEILISRSARQSTFPAQFQLVTAMNPCPCGYYADGTDRCRCSPDQIRRYQGKVSGPLLDRIDLQLSVQALSQQEMIEI
PQTQESSESVRERVVRCRQVQLSRQGGPNQALTGPQLESLCQIEQKDKEMLAKALEKLQLSARAYHRILRVARTIADLAG
SEVVQRAHLMEALSYRVAARSSLN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1096552 ACMXYR_RS00975 WP_415902557.1 234119..235633(+) (comM) [Neptuniibacter sp. QD29_5]
ATGTCTTTAGCGATAGCGTATACGCGCGCGCAGGTAGGGATAGATGCACCTGCGGTTACGGTCGAGGTCCATTTATCTGG
TGGCCTTCCTAGTTTTTCCATAGTTGGGTTGCCTGAAGCTGCGGTGAAAGAAAGCCGCGAACGGGTGCGTAGTGCTCTGA
TTAATTCAGGTTTTGAATTCCCTCAACGGCGTATCACGGTCAATTTAGCTCCCGCTGATCTACCGAAAGAGGGTGGGCGG
TACGATTTAGCCATTGCTGTAGGTATCTTGGCGGCTACTAATCAATTGCCAGCCAAATCATTAGCTGATGTTGAACTGAT
TGGCGAATTGGCTTTGTCTGGTGAGTTACGGCCTGTGACTGGGGTTTTGCCTGTTGCGCTCGCGTGCCGCTCCGAGCAGC
GCCATTTGTTGCTACCCGAGATGAACCAAAATGAAGCGTTAATGGCCTCGGGTTTATCGGTATTGCCGGCAGGTCATCTG
CTACAAATCTGCGCTCATTTACAAGGTTCTGAGCTGATTCCTGTTGCGCAGGCGCAAATTCAGCCTTTTGCCTTAGGTGC
TTCAGGCCCTGATCTGAGCGACGTCAAAGGGCAGGCGCAAGCAAAACGTGCTTTAGAGGTTGCCGCAGCGGGCGGTCATA
ATATTTTGCTGGTGGGGCCGCCAGGCAGTGGTAAAAGTATGTTGGCTAACCGTTTGCCGGGTTTGTTACCACAGATGACC
GAACAGGAAGCCTTGGAGGTCGCAGCAGTCTACTCTATTACTCAGGGTAGTAGTGAAGCGTGCTTGCCTCGTAAGCGTCC
TTTCCGCGCACCGCATCATACGGCGTCGTCTGTAGCGCTTGTTGGTGGTGGGGGGAACCCTAAGCCAGGAGAGATCTCTT
TAGCGCACCAAGGGATTCTCTTTCTGGATGAGCTACCCGAATTCAGCCGTAAAGTTTTAGAAGTGCTGAGGGAGCCCTTG
GAGTCAGGTGAGATATTAATTTCTCGGTCGGCACGACAATCTACTTTTCCAGCACAGTTTCAATTAGTGACAGCCATGAA
TCCCTGTCCTTGTGGCTATTATGCTGATGGTACAGATCGCTGTCGTTGCAGCCCTGATCAGATAAGACGTTATCAAGGCA
AGGTTTCTGGACCTTTGTTAGACCGTATTGATCTTCAGTTAAGTGTGCAGGCGCTGTCACAACAGGAGATGATTGAGATT
CCACAAACACAAGAATCAAGCGAGTCTGTTCGCGAAAGGGTAGTGCGTTGTCGCCAAGTTCAACTTAGTCGCCAAGGTGG
ACCAAATCAGGCGTTAACAGGGCCACAATTGGAATCTCTTTGTCAGATAGAGCAGAAAGATAAAGAGATGCTAGCCAAAG
CGTTAGAGAAACTACAGCTGTCAGCGAGGGCATATCATCGTATTTTGAGAGTGGCAAGAACGATTGCTGATTTGGCCGGT
TCTGAGGTGGTGCAGCGCGCGCATTTAATGGAAGCTTTAAGTTATCGGGTCGCGGCTAGGAGTAGTTTGAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.274

99.802

0.542
  comM Vibrio campbellii strain DS40M4

54

99.206

0.536
  comM Vibrio cholerae strain A1552

53.386

99.603

0.532
  comM Glaesserella parasuis strain SC1401

52.883

99.802

0.528
  comM Legionella pneumophila str. Paris

52.988

99.603

0.528
  comM Legionella pneumophila strain ERS1305867

52.988

99.603

0.528
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.294

100

0.454

Multiple sequence alignment