Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   ACMXYW_RS08940 Genome accession   NZ_CP180555
Coordinates   1956873..1957631 (-) Length   252 a.a.
NCBI ID   WP_415903769.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD48_55     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1951873..1962631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYW_RS08930 (ACMXYW_08930) - 1951949..1953175 (+) 1227 WP_415903766.1 ABC transporter substrate-binding protein -
  ACMXYW_RS08935 (ACMXYW_08935) - 1953200..1956841 (+) 3642 WP_415903768.1 response regulator -
  ACMXYW_RS08940 (ACMXYW_08940) ideA 1956873..1957631 (-) 759 WP_415903769.1 endonuclease Regulator
  ACMXYW_RS08945 (ACMXYW_08945) - 1957771..1958391 (-) 621 WP_415903770.1 uracil-DNA glycosylase -
  ACMXYW_RS08950 (ACMXYW_08950) - 1958384..1958872 (-) 489 WP_415903771.1 paraquat-inducible protein A -
  ACMXYW_RS08955 (ACMXYW_08955) - 1959044..1960159 (-) 1116 WP_415903772.1 hypothetical protein -
  ACMXYW_RS08960 (ACMXYW_08960) - 1960675..1961004 (-) 330 WP_415903773.1 hypothetical protein -
  ACMXYW_RS08965 (ACMXYW_08965) - 1961261..1961623 (-) 363 WP_415903775.1 hypothetical protein -
  ACMXYW_RS08970 (ACMXYW_08970) - 1961733..1962332 (-) 600 WP_415903776.1 fasciclin domain-containing protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28867.10 Da        Isoelectric Point: 9.7288

>NTDB_id=1096537 ACMXYW_RS08940 WP_415903769.1 1956873..1957631(-) (ideA) [Neptuniibacter sp. QD48_55]
MYKYFSVALLMIPGLALAEHPKSFGSAKKILKEIYADNQQSFYCGCDYKAQGKKLVPDLKSCGYSPRKNANRAKRIEWEH
VMPAWAFGHQLQCWQDGGRKACKKNPKFKKMESDLHNLVPAIGEVNGDRSNFSFTQLAGEPRVYGQCDMEVDFKQRKAEP
AEHRRGDIARTYFYMRDQYGVRISNKQEKLFNAWAKLDPVDQWELERNRMITKIQGNTNPYVVAPTGSVKLAESIENKDG
LLSRLKTALSMD

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1096537 ACMXYW_RS08940 WP_415903769.1 1956873..1957631(-) (ideA) [Neptuniibacter sp. QD48_55]
ATGTACAAGTACTTTTCTGTGGCTCTTCTAATGATCCCAGGCTTGGCTTTAGCTGAGCATCCTAAGTCTTTCGGTAGTGC
TAAAAAGATTCTTAAAGAGATCTACGCAGATAACCAGCAGAGCTTTTATTGTGGTTGTGACTATAAAGCTCAAGGTAAAA
AGTTAGTGCCAGATTTAAAATCCTGTGGCTACTCACCACGTAAAAACGCGAATAGAGCAAAGCGTATTGAGTGGGAGCAC
GTAATGCCGGCTTGGGCTTTTGGTCATCAATTGCAATGTTGGCAAGACGGAGGACGCAAAGCTTGTAAGAAGAACCCTAA
ATTTAAGAAGATGGAATCTGACCTTCACAACCTTGTACCTGCAATCGGCGAGGTTAATGGTGATCGATCTAATTTTAGCT
TCACACAATTAGCAGGTGAACCGCGTGTTTATGGGCAATGTGATATGGAAGTCGATTTTAAGCAGCGTAAGGCCGAGCCA
GCTGAACATCGCCGTGGCGACATTGCTCGTACGTACTTTTATATGCGCGATCAGTATGGCGTTCGTATCAGTAATAAGCA
GGAAAAGCTGTTTAATGCTTGGGCAAAGCTAGATCCCGTTGATCAATGGGAGTTAGAGCGCAATCGAATGATTACTAAAA
TCCAAGGTAATACTAATCCTTATGTTGTTGCGCCAACTGGCTCAGTAAAATTGGCGGAATCGATAGAAAATAAGGATGGT
TTATTATCACGCCTTAAAACTGCATTGAGTATGGATTAG

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(34-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

59.817

86.905

0.52
  dns Vibrio parahaemolyticus RIMD 2210633

57.589

88.889

0.512
  dns Vibrio cholerae strain A1552

56.696

88.889

0.504
  dns Aliivibrio fischeri ES114

59.524

83.333

0.496
  dns Campylobacter jejuni RM1221

44.091

87.302

0.385

Multiple sequence alignment