Detailed information NTG1096519

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACMXYT_RS14000
• Genome accession: NZ_CP180552
• Coordinates: 2990481..2991653 (+)
• Length: 390 a.a.
• NCBI ID: WP_415899170.1
• Uniprot ID: -
• Organism: Neptuniibacter sp. QD37_11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2985481..2996653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYT_RS13980 (ACMXYT_13980)	-	2986801..2987571 (-)	771	WP_415899167.1	metal ABC transporter permease	-
ACMXYT_RS13985 (ACMXYT_13985)	-	2987571..2988470 (-)	900	WP_415899168.1	metal ABC transporter substrate-binding protein	-
ACMXYT_RS13990 (ACMXYT_13990)	-	2988451..2989560 (-)	1110	WP_415889258.1	hypothetical protein	-
ACMXYT_RS13995 (ACMXYT_13995)	-	2989676..2990329 (-)	654	WP_415899169.1	DUF1826 domain-containing protein	-
ACMXYT_RS14000 (ACMXYT_14000)	pilU	2990481..2991653 (+)	1173	WP_415899170.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACMXYT_RS14005 (ACMXYT_14005)	-	2991772..2992611 (-)	840	WP_415899171.1	SPFH domain-containing protein	-
ACMXYT_RS14010 (ACMXYT_14010)	fadA	2992798..2993973 (-)	1176	WP_415895155.1	acetyl-CoA C-acyltransferase FadA	-
ACMXYT_RS14015 (ACMXYT_14015)	fadB	2993986..2996148 (-)	2163	WP_415911591.1	fatty acid oxidation complex subunit alpha FadB	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43668.79 Da
• Isoelectric Point: 5.0386

>NTDB_id=1096519 ACMXYT_RS14000 WP_415899170.1 2990481..2991653(+) (pilU) [Neptuniibacter sp. QD37_11]
MEFKDYLTILAKRDGSDLYLTTGAPPCAKFEGKLTPLSKEPYKPGEIEAIANSLMDEQQRATFEEELEMNLAYSIPKVAR
YRINIFKQRNQYSLVARNIKADIPKMEDLGLPPVLKDVIMEKRGLVLFVGATGSGKSTSLAALIDHRNRNSGGHIITIED
PIEFVHNHRKSLINQREVGVDTRNFHSALKNALRQAPDVILIGEIRDQETMEQCLTYAETGHLAISTLHANNANQAIDRI
INFFPQARHKQIFHDLALNLKAIISQRLIPTIEGKRCAAIEILLGTSSVQELIMKGDVKEIKEVMSKGSDTTGMQTFDDS
LFKLFDEGKITQDQAIINADSANDMRLRMNLAVVDDKAEKTDTAPEPEQQPFDEDNPLAGIKLLDEDEEV

Nucleotide

• Length: 1173 bp

>NTDB_id=1096519 ACMXYT_RS14000 WP_415899170.1 2990481..2991653(+) (pilU) [Neptuniibacter sp. QD37_11]
ATGGAATTTAAGGATTACCTTACAATTTTGGCGAAACGTGACGGCTCCGACCTTTACCTAACTACCGGCGCTCCACCCTG
TGCAAAGTTCGAAGGTAAGTTAACGCCATTAAGTAAAGAGCCTTATAAACCCGGAGAGATCGAAGCAATCGCAAACTCCT
TAATGGATGAGCAGCAACGCGCCACCTTCGAAGAAGAACTAGAGATGAACCTCGCTTACTCTATTCCCAAAGTAGCGCGT
TACCGTATCAACATCTTTAAGCAACGAAACCAATACTCTCTGGTCGCGCGTAATATCAAAGCCGATATTCCTAAGATGGA
AGACTTAGGCCTACCGCCCGTCCTTAAAGATGTGATTATGGAGAAACGCGGCTTAGTACTGTTTGTTGGCGCGACAGGTT
CGGGTAAATCAACATCGCTTGCTGCACTGATTGATCACCGTAACCGTAATAGCGGCGGTCATATCATCACCATTGAAGAT
CCTATCGAGTTTGTCCACAACCACCGGAAATCGTTAATCAATCAGCGTGAAGTTGGAGTTGATACTCGTAACTTCCACAG
TGCACTTAAAAACGCTCTACGCCAAGCACCTGATGTCATTTTGATCGGTGAGATTCGTGATCAGGAAACTATGGAACAGT
GCCTAACCTACGCAGAAACTGGTCACTTAGCAATCTCAACACTGCATGCTAATAACGCTAACCAAGCAATTGATCGTATT
ATTAACTTCTTCCCTCAGGCACGGCATAAACAGATCTTCCATGACCTCGCCCTCAACCTCAAAGCAATTATCTCTCAGCG
TCTGATTCCAACCATTGAAGGTAAACGTTGCGCAGCAATTGAGATACTTCTGGGAACCTCCAGTGTTCAAGAGCTAATCA
TGAAAGGTGACGTCAAAGAGATCAAAGAGGTTATGTCTAAAGGCTCTGATACCACCGGCATGCAAACCTTTGATGACTCG
TTATTCAAACTCTTTGATGAAGGCAAAATCACACAAGACCAAGCGATCATCAATGCTGACTCAGCAAACGATATGCGCCT
TCGCATGAACCTAGCAGTCGTTGATGACAAAGCGGAAAAAACCGATACAGCACCGGAACCCGAGCAACAGCCATTCGATG
AAGATAATCCACTAGCTGGGATTAAGCTATTGGATGAAGACGAAGAGGTTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	52.603	93.59	0.492
pilU	Acinetobacter baylyi ADP1	51.412	90.769	0.467
pilU	Vibrio cholerae strain A1552	45.938	91.538	0.421
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.234	94.103	0.397
pilT	Pseudomonas aeruginosa PAK	42.388	85.897	0.364