Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMXYT_RS01000 Genome accession   NZ_CP180552
Coordinates   228294..229808 (+) Length   504 a.a.
NCBI ID   WP_415911753.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD37_11     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 223294..234808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYT_RS00975 (ACMXYT_00975) glnK 223788..224126 (-) 339 WP_415889925.1 P-II family nitrogen regulator -
  ACMXYT_RS00980 (ACMXYT_00980) - 224324..225580 (-) 1257 WP_415899813.1 ammonium transporter -
  ACMXYT_RS00985 (ACMXYT_00985) - 225619..225957 (-) 339 WP_415899815.1 P-II family nitrogen regulator -
  ACMXYT_RS00990 (ACMXYT_00990) - 226243..226497 (+) 255 WP_415899816.1 accessory factor UbiK family protein -
  ACMXYT_RS00995 (ACMXYT_00995) - 226534..228180 (+) 1647 WP_415899817.1 diguanylate cyclase domain-containing protein -
  ACMXYT_RS01000 (ACMXYT_01000) comM 228294..229808 (+) 1515 WP_415911753.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMXYT_RS01005 (ACMXYT_01005) - 229818..231536 (-) 1719 WP_415899819.1 EAL domain-containing protein -
  ACMXYT_RS01010 (ACMXYT_01010) rep 231796..233805 (+) 2010 WP_415899820.1 DNA helicase Rep -
  ACMXYT_RS01015 (ACMXYT_01015) - 233865..234284 (-) 420 WP_415889933.1 c-type cytochrome -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54327.33 Da        Isoelectric Point: 7.2040

>NTDB_id=1096506 ACMXYT_RS01000 WP_415911753.1 228294..229808(+) (comM) [Neptuniibacter sp. QD37_11]
MSLAIAYTRAQVGIDAPAVTVEVHLSGGLPSFSIVGLPEAAVKESRERVRSALINSGFEFPQRRITVNLAPADLPKEGGR
YDLAIAVGILAATNQLPAKSLADVELIGELALSGELRPVTGVLPVALACRSEQRHLLLPEMNQNEALMASDLSVLPASHL
LQVCAHLQGSELISVAQAKDQPLSTDAFGPDLGDVKGQAQAKRALEVAAAGGHNILLVGPPGSGKSMLANRLPGLLPQMT
EQEALEVAAVYSITQSSSETRLPRKRPFRAPHHTASSVALVGGGGNPKPGEISLAHQGILFLDELPEFSRKVLEVLREPL
ESGEILISRAARQSTFPAQFQLVTAMNPCPCGYYADGTDRCRCSPDQIRRYQGKVSGPLLDRIDLQLSVQALSQQEMIEI
PQAQESSQSVRERVVKSRQVQLSRQGVPNQALTGPQLEILCQIEQKDKEMLAKALEKLQLSARAYHRVLRVARTIADLAD
SEKVERSHLMEALSYRVAARSSLN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1096506 ACMXYT_RS01000 WP_415911753.1 228294..229808(+) (comM) [Neptuniibacter sp. QD37_11]
ATGTCTTTAGCGATAGCATATACGCGCGCGCAGGTAGGAATTGATGCACCTGCGGTTACTGTCGAAGTTCACCTATCTGG
TGGCCTTCCAAGTTTTTCAATAGTTGGGTTGCCTGAGGCTGCGGTAAAAGAAAGTCGCGAACGGGTACGTAGTGCTCTGA
TTAATTCAGGTTTTGAATTTCCCCAACGTCGTATTACGGTCAATTTAGCCCCAGCTGACCTGCCAAAAGAGGGTGGGCGT
TATGATTTAGCCATTGCTGTAGGTATCTTGGCGGCTACTAATCAATTGCCAGCCAAATCATTAGCTGATGTCGAACTGAT
TGGCGAATTAGCCCTTTCGGGTGAGTTGCGACCTGTGACTGGGGTATTACCGGTTGCGCTCGCGTGCCGCTCCGAGCAGC
GTCATCTGTTGCTACCCGAGATGAACCAAAATGAAGCGTTAATGGCCTCGGACTTATCTGTATTACCCGCAAGTCACCTA
CTGCAAGTCTGTGCGCATCTACAAGGTTCTGAGTTAATTTCAGTTGCGCAGGCAAAAGATCAGCCTTTATCCACCGATGC
TTTTGGGCCGGATCTGGGCGATGTTAAAGGTCAGGCGCAAGCAAAACGCGCTTTAGAGGTGGCAGCTGCGGGTGGTCATA
ATATTTTGCTGGTGGGGCCGCCAGGGAGTGGTAAAAGCATGTTGGCTAACCGTTTGCCAGGGTTGTTACCGCAGATGACT
GAGCAGGAAGCGCTGGAGGTGGCTGCGGTTTACTCTATTACTCAAAGTAGTAGTGAAACTCGTTTACCCAGAAAGCGACC
TTTCCGCGCACCCCATCACACAGCTTCGTCTGTCGCGCTGGTTGGTGGTGGCGGAAACCCGAAACCAGGTGAGATTTCAT
TAGCGCATCAAGGCATCCTCTTTTTGGATGAGTTGCCTGAATTTAGTCGCAAAGTGTTGGAAGTACTGCGAGAACCGTTG
GAATCGGGTGAGATTTTAATATCACGGGCTGCACGGCAATCGACGTTTCCAGCGCAATTCCAGTTAGTAACAGCTATGAA
TCCATGCCCTTGTGGTTATTACGCTGATGGTACGGACCGCTGTCGCTGTAGTCCTGACCAGATAAGGCGTTATCAAGGCA
AGGTGTCTGGGCCGTTGTTAGATCGTATTGATCTGCAGTTGAGCGTTCAGGCGCTGTCACAGCAGGAGATGATTGAAATT
CCCCAAGCCCAAGAGTCCAGTCAGTCAGTGCGTGAAAGAGTGGTGAAATCTCGCCAAGTTCAACTCAGCCGCCAAGGCGT
ACCTAATCAGGCATTAACAGGGCCGCAGTTAGAAATACTCTGCCAGATAGAGCAAAAAGACAAAGAGATGCTCGCTAAAG
CATTAGAGAAGTTGCAGTTGTCGGCGAGGGCTTATCATCGTGTATTAAGAGTGGCGAGAACTATTGCAGATTTAGCTGAC
TCCGAGAAGGTCGAGCGTTCGCATCTGATGGAAGCGTTAAGTTATAGGGTCGCGGCTAGAAGTAGTTTGAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.076

99.802

0.54
  comM Legionella pneumophila str. Paris

54.309

99.008

0.538
  comM Legionella pneumophila strain ERS1305867

54.309

99.008

0.538
  comM Vibrio campbellii strain DS40M4

54.2

99.206

0.538
  comM Vibrio cholerae strain A1552

53.785

99.603

0.536
  comM Glaesserella parasuis strain SC1401

52.268

100

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.454

Multiple sequence alignment