Detailed information NTG1096496

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACMXYU_RS14065
• Genome accession: NZ_CP180551
• Coordinates: 3010535..3011707 (+)
• Length: 390 a.a.
• NCBI ID: WP_415899170.1
• Uniprot ID: -
• Organism: Neptuniibacter sp. QD48_11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3005535..3016707

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYU_RS14045 (ACMXYU_14045)	-	3006855..3007625 (-)	771	WP_415899167.1	metal ABC transporter permease	-
ACMXYU_RS14050 (ACMXYU_14050)	-	3007625..3008524 (-)	900	WP_415899168.1	metal ABC transporter substrate-binding protein	-
ACMXYU_RS14055 (ACMXYU_14055)	-	3008505..3009614 (-)	1110	WP_415889258.1	hypothetical protein	-
ACMXYU_RS14060 (ACMXYU_14060)	-	3009730..3010383 (-)	654	WP_415899169.1	DUF1826 domain-containing protein	-
ACMXYU_RS14065 (ACMXYU_14065)	pilU	3010535..3011707 (+)	1173	WP_415899170.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACMXYU_RS14070 (ACMXYU_14070)	-	3011826..3012665 (-)	840	WP_415899171.1	SPFH domain-containing protein	-
ACMXYU_RS14075 (ACMXYU_14075)	fadA	3012852..3014027 (-)	1176	WP_415895155.1	acetyl-CoA C-acyltransferase FadA	-
ACMXYU_RS14080 (ACMXYU_14080)	fadB	3014040..3016202 (-)	2163	WP_415899172.1	fatty acid oxidation complex subunit alpha FadB	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43668.79 Da
• Isoelectric Point: 5.0386

>NTDB_id=1096496 ACMXYU_RS14065 WP_415899170.1 3010535..3011707(+) (pilU) [Neptuniibacter sp. QD48_11]
MEFKDYLTILAKRDGSDLYLTTGAPPCAKFEGKLTPLSKEPYKPGEIEAIANSLMDEQQRATFEEELEMNLAYSIPKVAR
YRINIFKQRNQYSLVARNIKADIPKMEDLGLPPVLKDVIMEKRGLVLFVGATGSGKSTSLAALIDHRNRNSGGHIITIED
PIEFVHNHRKSLINQREVGVDTRNFHSALKNALRQAPDVILIGEIRDQETMEQCLTYAETGHLAISTLHANNANQAIDRI
INFFPQARHKQIFHDLALNLKAIISQRLIPTIEGKRCAAIEILLGTSSVQELIMKGDVKEIKEVMSKGSDTTGMQTFDDS
LFKLFDEGKITQDQAIINADSANDMRLRMNLAVVDDKAEKTDTAPEPEQQPFDEDNPLAGIKLLDEDEEV

Nucleotide

• Length: 1173 bp

>NTDB_id=1096496 ACMXYU_RS14065 WP_415899170.1 3010535..3011707(+) (pilU) [Neptuniibacter sp. QD48_11]
ATGGAATTTAAGGATTACCTTACAATTTTGGCGAAACGTGACGGCTCCGACCTTTACCTAACTACCGGCGCTCCACCCTG
TGCAAAGTTCGAAGGTAAGTTAACGCCATTAAGTAAAGAGCCTTATAAACCCGGAGAGATCGAAGCAATCGCAAACTCCT
TAATGGATGAGCAGCAACGCGCCACCTTCGAAGAAGAACTAGAGATGAACCTCGCTTACTCTATTCCCAAAGTAGCGCGT
TACCGTATCAACATCTTTAAGCAACGAAACCAATACTCTCTGGTCGCGCGTAATATCAAAGCCGATATTCCTAAGATGGA
AGACTTAGGCCTACCGCCCGTCCTTAAAGATGTGATTATGGAGAAACGCGGCTTAGTACTGTTTGTTGGCGCGACAGGTT
CGGGTAAATCAACATCGCTTGCTGCACTGATTGATCACCGTAACCGTAATAGCGGCGGTCATATCATCACCATTGAAGAT
CCTATCGAGTTTGTCCACAACCACCGGAAATCGTTAATCAATCAGCGTGAAGTTGGAGTTGATACTCGTAACTTCCACAG
TGCACTTAAAAACGCTCTACGCCAAGCACCTGATGTCATTTTGATCGGTGAGATTCGTGATCAGGAAACTATGGAACAGT
GCCTAACCTACGCAGAAACTGGTCACTTAGCAATCTCAACACTGCATGCTAATAACGCTAACCAAGCAATTGATCGTATT
ATTAACTTCTTCCCTCAGGCACGGCATAAACAGATCTTCCATGACCTCGCCCTCAACCTCAAAGCAATTATCTCTCAGCG
TCTGATTCCAACCATTGAAGGTAAACGTTGCGCAGCAATTGAGATACTTCTGGGAACCTCCAGTGTTCAAGAGCTAATCA
TGAAAGGTGACGTCAAAGAGATCAAAGAGGTTATGTCTAAAGGCTCTGATACCACCGGCATGCAAACCTTTGATGACTCG
TTATTCAAACTCTTTGATGAAGGCAAAATCACACAAGACCAAGCGATCATCAATGCTGACTCAGCAAACGATATGCGCCT
TCGCATGAACCTAGCAGTCGTTGATGACAAAGCGGAAAAAACCGATACAGCACCGGAACCCGAGCAACAGCCATTCGATG
AAGATAATCCACTAGCTGGGATTAAGCTATTGGATGAAGACGAAGAGGTTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	52.603	93.59	0.492
pilU	Acinetobacter baylyi ADP1	51.412	90.769	0.467
pilU	Vibrio cholerae strain A1552	45.938	91.538	0.421
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.234	94.103	0.397
pilT	Pseudomonas aeruginosa PAK	42.388	85.897	0.364