Detailed information NTG1096473

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACMXYO_RS14225
• Genome accession: NZ_CP180550
• Coordinates: 2967589..2968761 (+)
• Length: 390 a.a.
• NCBI ID: WP_415885756.1
• Uniprot ID: -
• Organism: Neptuniibacter sp. QD37_6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2962589..2973761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYO_RS14205 (ACMXYO_14205)	-	2963909..2964679 (-)	771	WP_415885750.1	metal ABC transporter permease	-
ACMXYO_RS14210 (ACMXYO_14210)	-	2964679..2965578 (-)	900	WP_415885751.1	metal ABC transporter substrate-binding protein	-
ACMXYO_RS14215 (ACMXYO_14215)	-	2965559..2966668 (-)	1110	WP_415885753.1	hypothetical protein	-
ACMXYO_RS14220 (ACMXYO_14220)	-	2966784..2967437 (-)	654	WP_415885754.1	DUF1826 domain-containing protein	-
ACMXYO_RS14225 (ACMXYO_14225)	pilU	2967589..2968761 (+)	1173	WP_415885756.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACMXYO_RS14230 (ACMXYO_14230)	-	2968971..2969222 (+)	252	WP_415885757.1	hypothetical protein	-
ACMXYO_RS14235 (ACMXYO_14235)	-	2969788..2970078 (+)	291	WP_415885759.1	hypothetical protein	-
ACMXYO_RS14240 (ACMXYO_14240)	fadA	2970392..2971567 (-)	1176	WP_415885760.1	acetyl-CoA C-acyltransferase FadA	-
ACMXYO_RS14245 (ACMXYO_14245)	fadB	2971580..2973742 (-)	2163	WP_415885761.1	fatty acid oxidation complex subunit alpha FadB	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43638.72 Da
• Isoelectric Point: 4.9593

>NTDB_id=1096473 ACMXYO_RS14225 WP_415885756.1 2967589..2968761(+) (pilU) [Neptuniibacter sp. QD37_6]
MEFKDYLTILAKRDGSDLYLTTGAPPCAKFEGKLTPLSKEPYKPGEIEAIANSLMDEQQRATFEEELEMNLAYSIPKVAR
YRINIFKQRNQYSLVARNIKADIPKMEDLGLPPVLKDVIMEKRGLVLFVGATGSGKSTSLAALIDHRNRNSGGHIITIED
PIEFVHNHRKSLINQREVGVDTRNFHSALKNALRQAPDVILIGEIRDQETMEQCLTYAETGHLAISTLHANNANQAIDRI
INFFPQARHKQIFHDLALNLKAIISQRLIPTIEGKRCAAIEILLGTSSVQELIMKGDVKEIKEVMSKGSDTTGMQTFDDS
LFKLFDEGKITQDQAIINADSANDMRLRMNLAVVDDKAEKTDAAPEPEQQPFDEDNPLAGIQLLDEDEEV

Nucleotide

• Length: 1173 bp

>NTDB_id=1096473 ACMXYO_RS14225 WP_415885756.1 2967589..2968761(+) (pilU) [Neptuniibacter sp. QD37_6]
ATGGAATTTAAGGATTACCTTACGATTTTGGCGAAACGTGACGGCTCCGACCTTTACCTCACAACTGGAGCACCGCCTTG
TGCAAAGTTTGAAGGTAAATTAACGCCATTAAGTAAAGAGCCTTATAAGCCCGGTGAGATCGAAGCAATCGCAAATTCCT
TAATGGATGAGCAGCAACGCGCTACCTTCGAAGAAGAGCTAGAGATGAACTTGGCTTATTCCATTCCGAAAGTAGCTCGC
TACCGGATAAATATATTTAAACAACGTAACCAATACTCACTGGTTGCGCGTAATATCAAAGCCGATATCCCAAAAATGGA
AGACTTGGGCCTACCCCCCGTCCTGAAAGATGTGATCATGGAAAAACGCGGGCTAGTCTTATTTGTAGGTGCTACAGGTT
CGGGTAAATCAACATCGCTTGCGGCACTAATCGATCACCGTAACCGTAATAGCGGTGGCCATATCATCACCATTGAAGAC
CCGATAGAGTTTGTCCACAACCACCGAAAATCTCTGATCAACCAACGTGAAGTTGGGGTTGATACTCGTAACTTCCACAG
TGCACTTAAAAACGCCCTGCGCCAAGCGCCTGATGTAATATTGATCGGTGAGATTCGTGATCAGGAAACTATGGAGCAAT
GCCTGACCTACGCAGAAACTGGTCACTTAGCAATCTCAACACTGCATGCTAACAATGCTAACCAAGCAATTGATCGTATT
ATTAACTTCTTCCCTCAGGCACGGCATAAACAGATATTCCATGACCTCGCCCTGAACCTCAAAGCAATTATCTCTCAGCG
TCTGATTCCAACCATTGAAGGTAAACGTTGCGCAGCAATTGAGATACTTCTGGGAACCTCCAGTGTTCAAGAGCTAATCA
TGAAAGGTGACGTCAAAGAGATCAAAGAGGTTATGTCTAAAGGCTCTGATACCACCGGTATGCAAACCTTTGATGACTCG
TTATTCAAACTCTTTGATGAGGGCAAAATTACACAAGACCAAGCGATCATCAATGCTGACTCAGCAAACGATATGCGCCT
TCGAATGAACCTAGCAGTCGTTGATGACAAAGCGGAAAAAACCGATGCGGCACCGGAACCCGAGCAACAGCCCTTCGATG
AAGATAATCCACTAGCTGGAATTCAACTATTGGATGAAGACGAAGAGGTTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	52.603	93.59	0.492
pilU	Acinetobacter baylyi ADP1	51.412	90.769	0.467
pilU	Vibrio cholerae strain A1552	45.938	91.538	0.421
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.507	94.103	0.4
pilT	Pseudomonas aeruginosa PAK	42.388	85.897	0.364