Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMXYO_RS01045 Genome accession   NZ_CP180550
Coordinates   249093..250607 (+) Length   504 a.a.
NCBI ID   WP_415886585.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD37_6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 244093..255607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYO_RS01020 (ACMXYO_01020) glnK 244588..244926 (-) 339 WP_415886579.1 P-II family nitrogen regulator -
  ACMXYO_RS01025 (ACMXYO_01025) - 245124..246380 (-) 1257 WP_415886580.1 ammonium transporter -
  ACMXYO_RS01030 (ACMXYO_01030) - 246419..246757 (-) 339 WP_415886581.1 P-II family nitrogen regulator -
  ACMXYO_RS01035 (ACMXYO_01035) - 247044..247298 (+) 255 WP_415886582.1 accessory factor UbiK family protein -
  ACMXYO_RS01040 (ACMXYO_01040) - 247335..248981 (+) 1647 WP_415886583.1 diguanylate cyclase domain-containing protein -
  ACMXYO_RS01045 (ACMXYO_01045) comM 249093..250607 (+) 1515 WP_415886585.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMXYO_RS01050 (ACMXYO_01050) - 250616..252334 (-) 1719 WP_415886587.1 EAL domain-containing protein -
  ACMXYO_RS01055 (ACMXYO_01055) rep 252592..254601 (+) 2010 WP_415886588.1 DNA helicase Rep -
  ACMXYO_RS01060 (ACMXYO_01060) - 254661..255077 (-) 417 WP_415886589.1 c-type cytochrome -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54010.15 Da        Isoelectric Point: 7.8575

>NTDB_id=1096460 ACMXYO_RS01045 WP_415886585.1 249093..250607(+) (comM) [Neptuniibacter sp. QD37_6]
MSLAIAYTRAQVGIDAPAVTVEVHLSGGLPSFSIVGLPEAAVKESRERVRSALINSGFEFPQRRITVNLAPADLPKEGGR
YDLAVAVGILAATNQLPAKSLADVELIGELALSGELRPVTGVLPVALACRSLQRHLLLPKMNQNEALMASDLSVLPAGHL
LQVCAHLQGSELIPVAQAQIQPFALGASGPDLSDVKGQAQAKRALEVAAAGGHNILLVGPPGSGKSMLANRLSGLLPQMT
EQEALEVAAVYSITQGSSEACLPRKRPFRAPHHTASSVALVGGGGNPKPGEISLAHQGILFLDELPEFSRKVLEVLREPL
ESGEILISRAARQSTFPAQFQLVTAMNPCPCGYYADGTDRCRCSPDQIRRYQGKVSGPLLDRIDLQLSVQALSQQEMIEI
PQTQESSESVRERVVRCRQVQLSRQGGPNQALTGPQLESLCQIEQKDKEMLAKALEKLQLSARAYHRILRVARTIADLAG
SEVVQRAHLMEALSYRVAARSSLN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1096460 ACMXYO_RS01045 WP_415886585.1 249093..250607(+) (comM) [Neptuniibacter sp. QD37_6]
ATGTCTTTAGCGATAGCGTATACGCGCGCGCAGGTCGGAATTGATGCACCTGCGGTTACTGTCGAGGTTCACCTGTCTGG
TGGCCTTCCGAGTTTTTCAATCGTTGGCTTGCCTGAGGCTGCGGTAAAAGAAAGCCGTGAACGGGTGCGTAGTGCTCTGA
TTAACTCAGGTTTTGAATTTCCTCAGCGCCGTATCACGGTCAATTTAGCTCCTGCAGATCTTCCGAAAGAAGGTGGTCGG
TATGATTTAGCCGTTGCGGTAGGTATCTTGGCGGCAACCAATCAGTTGCCAGCCAAATCATTAGCTGATGTCGAATTGAT
TGGTGAGCTAGCCTTGTCGGGTGAGTTGCGGCCCGTAACTGGGGTTTTACCCGTTGCGCTCGCTTGCCGATCTTTACAGC
GCCATCTGTTGCTGCCCAAAATGAACCAGAATGAAGCGCTAATGGCCTCGGATTTATCGGTATTGCCGGCAGGTCATCTG
CTACAAGTCTGCGCTCATTTACAAGGTTCTGAGCTGATTCCTGTTGCGCAGGCGCAAATTCAGCCTTTTGCCTTAGGTGC
TTCAGGCCCTGATCTGAGCGACGTCAAAGGGCAGGCGCAAGCAAAACGCGCTTTAGAGGTGGCAGCAGCGGGCGGTCATA
ATATTTTGCTGGTGGGGCCGCCAGGCAGTGGTAAGAGTATGTTGGCTAACCGTTTGTCGGGTTTGTTACCACAGATGACC
GAACAGGAAGCCTTGGAGGTCGCAGCAGTCTACTCTATTACTCAGGGTAGTAGTGAAGCGTGCTTGCCTCGTAAGCGTCC
TTTCCGCGCACCGCATCATACGGCGTCGTCTGTAGCGCTTGTTGGTGGTGGGGGGAACCCTAAGCCGGGAGAGATCTCTT
TAGCGCACCAAGGGATTCTCTTTTTGGATGAACTACCCGAATTCAGCCGTAAAGTTTTAGAAGTGCTGAGGGAGCCCTTG
GAGTCAGGTGAGATATTAATTTCTCGGGCGGCACGACAATCTACTTTTCCAGCACAGTTTCAATTAGTGACAGCCATGAA
TCCCTGCCCTTGTGGCTATTATGCTGATGGGACAGATCGTTGTCGTTGCAGCCCTGATCAGATAAGACGTTATCAAGGCA
AGGTTTCTGGACCGTTGTTAGATCGTATTGATCTTCAGTTAAGTGTGCAGGCGCTGTCACAACAGGAGATGATTGAGATT
CCACAAACACAAGAATCAAGCGAGTCTGTTCGCGAAAGGGTAGTGCGTTGTCGCCAAGTTCAACTTAGTCGCCAAGGTGG
ACCAAATCAGGCGTTAACAGGGCCACAATTGGAATCTCTTTGTCAGATAGAGCAGAAAGATAAAGAGATGCTAGCCAAAG
CGTTAGAAAAACTACAGCTGTCAGCGAGGGCATATCATCGTATTTTGAGAGTGGCAAGAACGATTGCTGATTTGGCCGGT
TCTGAGGTGGTGCAGCGCGCGCATTTAATGGAAGCTTTAAGTTATCGGGTCGCGGCTAGGAGTAGTTTGAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.871

99.802

0.548
  comM Vibrio campbellii strain DS40M4

54.2

99.206

0.538
  comM Vibrio cholerae strain A1552

53.586

99.603

0.534
  comM Legionella pneumophila str. Paris

53.386

99.603

0.532
  comM Legionella pneumophila strain ERS1305867

53.386

99.603

0.532
  comM Glaesserella parasuis strain SC1401

53.082

99.802

0.53
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.487

100

0.456

Multiple sequence alignment