Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMXYP_RS00990 Genome accession   NZ_CP180546
Coordinates   232969..234483 (+) Length   504 a.a.
NCBI ID   WP_415883150.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD34_54     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 227969..239483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYP_RS00965 (ACMXYP_00965) glnK 228462..228800 (-) 339 WP_415883145.1 P-II family nitrogen regulator -
  ACMXYP_RS00970 (ACMXYP_00970) - 228999..230255 (-) 1257 WP_415883146.1 ammonium transporter -
  ACMXYP_RS00975 (ACMXYP_00975) - 230293..230631 (-) 339 WP_415883147.1 P-II family nitrogen regulator -
  ACMXYP_RS00980 (ACMXYP_00980) - 230915..231169 (+) 255 WP_415883148.1 accessory factor UbiK family protein -
  ACMXYP_RS00985 (ACMXYP_00985) - 231206..232855 (+) 1650 WP_415883149.1 diguanylate cyclase domain-containing protein -
  ACMXYP_RS00990 (ACMXYP_00990) comM 232969..234483 (+) 1515 WP_415883150.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMXYP_RS00995 (ACMXYP_00995) - 234488..236206 (-) 1719 WP_415883151.1 EAL domain-containing protein -
  ACMXYP_RS01000 (ACMXYP_01000) rep 236464..238473 (+) 2010 WP_415883152.1 DNA helicase Rep -
  ACMXYP_RS01005 (ACMXYP_01005) - 238533..238952 (-) 420 WP_415883153.1 c-type cytochrome -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54101.12 Da        Isoelectric Point: 7.6643

>NTDB_id=1096391 ACMXYP_RS00990 WP_415883150.1 232969..234483(+) (comM) [Neptuniibacter sp. QD34_54]
MSLAIAYTRAQVGIDAPAVTVEVHLSGGLPSFSIVGLPEAAVKESRERVRSALINSGFEFPQRRITVNLAPADLPKEGGR
YDLAIAVGILAATNQLPAKSLADVELIGELALSGELRPVTGVLPVALACRSEQRHLLLPDMNQAEALMASGLSVLPAGHL
LQVCAHLQGSELISVAQAQVQPFTSDGSGPDLGDVKGQAQAKRALEVAAAGGHNILLVGPPGSGKSMLANRLPGLLPQMT
EQEALEVAAVYSITQSSSETRLPRKRPFRAPHHTASSVALVGGGGNPKPGEISLAHQGILFLDELPEFSRKVLEVLREPL
ESGEILISRAARQSTFPAQFQLVTAMNPCPCGYYADGTDRCRCSPDQIRRYQGKVSGPLLDRIDLQLSVQALSQQEMIEV
PKTQESSESVRERVVRCRQVQLSRQSVPNQALTGPQLETLCQIEQKDKEMLAKALEKLQLSARAYHRVLRVARTIADLAG
SEVVQRAHLMEALSYRVAARSSLN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1096391 ACMXYP_RS00990 WP_415883150.1 232969..234483(+) (comM) [Neptuniibacter sp. QD34_54]
ATGTCTTTAGCGATAGCGTATACGCGCGCGCAGGTAGGGATAGATGCACCTGCGGTTACGGTCGAGGTCCATTTATCTGG
TGGCCTTCCTAGTTTTTCCATAGTTGGGTTGCCTGAAGCTGCGGTGAAAGAAAGCCGCGAACGGGTGCGTAGTGCTCTGA
TTAATTCAGGTTTTGAATTCCCTCAACGGCGTATCACGGTCAATTTAGCTCCCGCTGATCTACCGAAAGAGGGTGGGCGG
TACGATTTAGCCATTGCTGTAGGTATCTTGGCGGCTACCAATCAATTGCCAGCCAAATCATTAGCTGATGTCGAACTGAT
TGGCGAATTGGCCCTTTCGGGCGAGTTGCGGCCCGTGACTGGCGTTTTACCGGTTGCCCTAGCGTGCCGCTCCGAGCAGC
GCCATTTGTTGTTACCTGATATGAACCAGGCTGAAGCGCTGATGGCCTCGGGCTTATCGGTATTGCCGGCAGGTCATTTG
CTTCAAGTTTGTGCTCATCTACAAGGTTCTGAGTTGATTTCAGTTGCGCAGGCACAAGTTCAGCCTTTTACCTCAGATGG
CTCTGGGCCTGATCTGGGCGATGTCAAAGGGCAGGCACAAGCAAAACGCGCTTTAGAGGTGGCAGCAGCGGGCGGTCATA
ATATTTTGTTGGTGGGGCCTCCAGGCAGTGGTAAAAGTATGTTGGCTAACCGTTTGCCGGGGTTGTTACCGCAGATGACC
GAACAGGAAGCGCTCGAGGTGGCTGCGGTTTATTCTATTACTCAAAGTAGTAGTGAAACACGTTTACCCAGAAAGCGACC
TTTCCGCGCACCACATCATACGGCTTCGTCTGTGGCACTTGTGGGAGGTGGCGGAAATCCTAAACCTGGTGAAATTTCTT
TAGCCCATCAAGGTATTCTTTTCTTGGATGAATTGCCTGAATTTAGTCGCAAAGTGTTGGAGGTGCTGCGTGAGCCGCTG
GAATCAGGTGAGATCTTAATCTCTCGAGCTGCACGGCAATCGACGTTCCCAGCACAATTTCAATTAGTGACAGCCATGAA
CCCTTGTCCTTGTGGCTATTACGCTGATGGTACAGATCGCTGTCGTTGCAGCCCTGATCAGATAAGACGTTATCAAGGCA
AGGTTTCTGGACCGTTGTTAGACCGTATTGATCTGCAGTTGAGTGTTCAGGCGCTGTCACAACAAGAGATGATTGAAGTT
CCAAAAACACAAGAATCAAGTGAGTCTGTTCGCGAGAGGGTAGTGCGGTGCCGCCAAGTTCAACTCAGCCGTCAGAGTGT
ACCTAATCAAGCGTTAACGGGACCGCAGCTAGAGACGCTTTGCCAGATAGAACAGAAAGATAAGGAAATGTTAGCGAAAG
CGTTAGAGAAACTGCAGTTATCCGCAAGAGCTTATCATCGTGTATTAAGGGTGGCGCGAACGATTGCAGACTTAGCCGGT
TCTGAAGTGGTGCAAAGGGCGCATCTAATGGAAGCATTAAGCTATAGGGTGGCGGCTAGAAGTAGTTTGAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.877

99.802

0.538
  comM Vibrio cholerae strain A1552

53.785

99.603

0.536
  comM Vibrio campbellii strain DS40M4

53.8

99.206

0.534
  comM Legionella pneumophila strain ERS1305867

53.8

99.206

0.534
  comM Legionella pneumophila str. Paris

53.8

99.206

0.534
  comM Glaesserella parasuis strain SC1401

52.071

100

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.272

100

0.452

Multiple sequence alignment