Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMXYN_RS01110 Genome accession   NZ_CP180545
Coordinates   257443..258957 (+) Length   504 a.a.
NCBI ID   WP_415893110.1    Uniprot ID   -
Organism   Neptuniibacter sp. PT8_73     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 252443..263957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYN_RS01085 (ACMXYN_01085) glnK 252937..253275 (-) 339 WP_415889925.1 P-II family nitrogen regulator -
  ACMXYN_RS01090 (ACMXYN_01090) - 253473..254729 (-) 1257 WP_415893106.1 ammonium transporter -
  ACMXYN_RS01095 (ACMXYN_01095) glnK 254768..255106 (-) 339 WP_415893107.1 P-II family nitrogen regulator -
  ACMXYN_RS01100 (ACMXYN_01100) - 255392..255646 (+) 255 WP_415893108.1 accessory factor UbiK family protein -
  ACMXYN_RS01105 (ACMXYN_01105) - 255683..257329 (+) 1647 WP_415893109.1 diguanylate cyclase domain-containing protein -
  ACMXYN_RS01110 (ACMXYN_01110) comM 257443..258957 (+) 1515 WP_415893110.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMXYN_RS01115 (ACMXYN_01115) - 258967..260685 (-) 1719 WP_415893111.1 EAL domain-containing protein -
  ACMXYN_RS01120 (ACMXYN_01120) rep 260943..262952 (+) 2010 WP_415893112.1 DNA helicase Rep -
  ACMXYN_RS01125 (ACMXYN_01125) - 263012..263431 (-) 420 WP_415883153.1 c-type cytochrome -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54241.15 Da        Isoelectric Point: 7.2039

>NTDB_id=1096368 ACMXYN_RS01110 WP_415893110.1 257443..258957(+) (comM) [Neptuniibacter sp. PT8_73]
MSLAIAYTRAQVGIDAPAVTVEVHLSGGLPSFSIVGLPEAAVKESRERVRSALINSGFEFPQRRITVNLAPADLPKEGGR
YDLAIAVGILAATNQLPAKSLADVELIGELALSGELRPVTGVLPVALACRSEQRHLLLPEMNQNEALMASDLSVLPSGHL
LQVCAHLQGSELIPVAQAQVQPFTSDGSGPDLGDVKGQAQAKRALEVAAAGGHNILLVGPPGSGKSMLANRLPGLLPQMT
EQEALEVAAVYSITQSSSDTRLPRKRPFRAPHHTASSVALVGGGGNPKPGEISLAHQGILFLDELPEFSRKVLEVLREPL
ESGEILISRAARQSTFPAQFQLVTAMNPCPCGYYADGTDRCRCSPDQIRRYQGKVSGPLLDRIDLQLSVQALSQQEMIEI
PQAQESSQSVRERVVKSRQVQLSRQGVPNQALTGPQLETLCQIEQKDKEMLAKALEKLQLSARAYHRVLRVARTIADLAD
SEKVERSHLMEALSYRVAARSSLN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1096368 ACMXYN_RS01110 WP_415893110.1 257443..258957(+) (comM) [Neptuniibacter sp. PT8_73]
ATGTCTTTAGCGATAGCGTATACGCGCGCGCAGGTCGGAATTGATGCGCCTGCGGTTACTGTCGAGGTCCACCTGTCTGG
TGGCCTTCCGAGTTTTTCAATAGTTGGGTTGCCTGAGGCAGCGGTAAAAGAAAGCCGTGAACGGGTGCGCAGTGCTCTGA
TTAATTCAGGTTTTGAATTTCCTCAACGTCGAATTACGGTCAATTTAGCTCCTGCGGACCTGCCAAAAGAGGGTGGGCGT
TACGATTTAGCTATTGCTGTAGGTATCTTGGCGGCTACCAATCAATTGCCAGCCAAATCATTAGCTGATGTCGAACTGAT
TGGCGAATTGGCCCTCTCGGGTGAGTTACGGCCCGTGACTGGGGTTTTACCGGTTGCGCTTGCGTGCCGCTCCGAGCAGC
GCCATTTGTTGCTACCCGAGATGAACCAAAATGAAGCGTTGATGGCCTCGGATTTATCTGTATTACCCTCAGGTCATCTC
CTGCAAGTCTGTGCGCATCTACAAGGCTCTGAGCTAATTCCAGTTGCGCAGGCACAAGTCCAACCTTTTACCTCAGATGG
TTCTGGGCCTGATCTGGGCGATGTCAAAGGGCAGGCGCAAGCAAAGCGCGCTTTAGAGGTGGCAGCCGCGGGCGGTCATA
ATATTTTGCTTGTAGGGCCGCCAGGCAGTGGCAAGAGTATGTTGGCTAATCGTTTGCCGGGTTTGTTACCGCAGATGACT
GAGCAGGAAGCGCTGGAGGTGGCTGCGGTTTACTCTATCACTCAAAGTAGTAGTGATACACGTTTGCCCCGAAAACGCCC
TTTCCGCGCGCCGCATCATACAGCTTCGTCTGTAGCGTTGGTCGGTGGTGGTGGAAACCCGAAACCGGGTGAAATCTCAT
TAGCGCATCAAGGTATTCTTTTCTTGGATGAGTTGCCTGAATTTAGCCGCAAAGTATTGGAAGTGCTGCGTGAGCCGTTG
GAATCGGGTGAGATTTTAATATCGAGGGCTGCACGGCAATCGACGTTCCCTGCCCAATTTCAGCTAGTAACAGCTATGAA
CCCATGCCCTTGTGGCTATTATGCCGATGGTACAGATCGTTGTCGCTGTAGTCCTGATCAGATAAGGCGTTATCAAGGCA
AGGTGTCTGGGCCGTTGTTAGATCGTATTGATCTGCAGTTGAGCGTTCAGGCGCTGTCACAGCAGGAGATGATTGAAATC
CCCCAAGCCCAAGAGTCCAGCCAGTCTGTGCGTGAAAGAGTCGTGAAATCTCGCCAAGTTCAACTCAGTCGCCAAGGTGT
ACCTAATCAGGCATTAACCGGGCCGCAGTTAGAAACGCTCTGCCAGATAGAGCAAAAAGACAAAGAGATGCTCGCTAAAG
CATTAGAGAAGTTGCAGTTGTCGGCGAGGGCTTATCATCGTGTCTTAAGGGTGGCGAGAACTATTGCGGATTTAGCTGAC
TCCGAGAAGGTCGAGCGTTCACATCTAATGGAAGCGTTAAGTTATAGGGTCGCGGCTAGAAGTAGTTTGAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.473

99.802

0.544
  comM Legionella pneumophila str. Paris

53.877

99.802

0.538
  comM Legionella pneumophila strain ERS1305867

53.877

99.802

0.538
  comM Vibrio campbellii strain DS40M4

53.8

99.206

0.534
  comM Vibrio cholerae strain A1552

53.386

99.603

0.532
  comM Glaesserella parasuis strain SC1401

52.071

100

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.487

100

0.456

Multiple sequence alignment