Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMXYQ_RS01075 Genome accession   NZ_CP180544
Coordinates   247458..248972 (+) Length   504 a.a.
NCBI ID   WP_415895510.1    Uniprot ID   -
Organism   Neptuniibacter sp. PT34_22     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 242458..253972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYQ_RS01050 (ACMXYQ_01050) glnK 242952..243290 (-) 339 WP_415889925.1 P-II family nitrogen regulator -
  ACMXYQ_RS01055 (ACMXYQ_01055) - 243488..244744 (-) 1257 WP_415893106.1 ammonium transporter -
  ACMXYQ_RS01060 (ACMXYQ_01060) glnK 244783..245121 (-) 339 WP_415893107.1 P-II family nitrogen regulator -
  ACMXYQ_RS01065 (ACMXYQ_01065) - 245407..245661 (+) 255 WP_415893108.1 accessory factor UbiK family protein -
  ACMXYQ_RS01070 (ACMXYQ_01070) - 245698..247344 (+) 1647 WP_415895509.1 diguanylate cyclase domain-containing protein -
  ACMXYQ_RS01075 (ACMXYQ_01075) comM 247458..248972 (+) 1515 WP_415895510.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMXYQ_RS01080 (ACMXYQ_01080) - 248982..250700 (-) 1719 WP_415895511.1 EAL domain-containing protein -
  ACMXYQ_RS01085 (ACMXYQ_01085) rep 250958..252967 (+) 2010 WP_415893112.1 DNA helicase Rep -
  ACMXYQ_RS01090 (ACMXYQ_01090) - 253027..253446 (-) 420 WP_415883153.1 c-type cytochrome -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54215.11 Da        Isoelectric Point: 7.2039

>NTDB_id=1096345 ACMXYQ_RS01075 WP_415895510.1 247458..248972(+) (comM) [Neptuniibacter sp. PT34_22]
MSLAIAYTRAQVGIDAPAVTVEVHLSGGLPSFSIVGLPEAAVKESRERVRSALINSGFEFPQRRITVNLAPADLPKEGGR
YDLAIAVGILAATNQLPAKSLADVELIGELALSGELRPVTGVLPVALACRSEQRHLLLPEMNQNEALMASDLSVLPSGHL
LQVCAHLQGSELIPVAQAQVQAFTSDGSGPDLGDVKGQAQAKRALEVAAAGGHNILLVGPPGSGKSMLANRLPGLLPQMT
EQEALEVAAVYSITQSSSDTRLPRKRPFRAPHHTASSVALVGGGGNPKPGEISLAHQGILFLDELPEFSRKVLEVLREPL
ESGEILISRAARQSTFPAQFQLVTAMNPCPCGYYADGTDRCRCSPDQIRRYQGKVSGPLLDRIDLQLSVQALSQQEMIEI
PQAQESSQSVRERVVKSRQVQLSRQGVPNQALTGPQLETLCQIEQKDKEMLAKALEKLQLSARAYHRVLRVARTIADLAD
SEKVERSHLMEALSYRVAARSSLN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1096345 ACMXYQ_RS01075 WP_415895510.1 247458..248972(+) (comM) [Neptuniibacter sp. PT34_22]
ATGTCTTTAGCGATAGCGTATACGCGCGCGCAGGTCGGAATTGATGCGCCTGCGGTTACTGTCGAGGTCCACCTGTCTGG
TGGCCTTCCGAGTTTTTCAATAGTTGGGTTGCCTGAGGCAGCGGTAAAAGAAAGCCGTGAACGGGTGCGCAGTGCTCTGA
TTAATTCAGGTTTTGAATTTCCTCAACGTCGAATTACGGTCAATTTAGCTCCTGCGGACCTGCCAAAAGAGGGTGGGCGT
TACGATTTAGCTATTGCTGTAGGTATCTTGGCGGCTACCAATCAATTGCCAGCCAAATCATTAGCTGATGTCGAACTGAT
TGGCGAATTGGCCCTCTCGGGTGAGTTACGGCCCGTGACTGGGGTTTTACCGGTTGCGCTTGCGTGCCGCTCCGAGCAGC
GCCATTTGTTGCTACCCGAGATGAACCAAAATGAAGCGTTGATGGCCTCGGATTTATCTGTATTACCCTCAGGTCATCTC
CTGCAAGTCTGTGCGCATCTACAAGGCTCTGAGCTAATTCCAGTTGCGCAGGCACAAGTCCAAGCTTTTACCTCAGATGG
TTCTGGGCCTGATCTGGGCGATGTCAAAGGGCAGGCGCAAGCAAAGCGCGCTTTAGAGGTGGCAGCCGCGGGCGGTCATA
ATATTTTGCTTGTAGGGCCGCCAGGCAGTGGCAAGAGTATGTTGGCTAATCGTTTGCCGGGTTTGTTACCGCAGATGACT
GAGCAGGAAGCGCTGGAGGTGGCTGCGGTTTACTCTATCACTCAAAGTAGTAGTGATACACGTTTGCCCCGAAAACGCCC
TTTCCGCGCGCCGCATCATACAGCTTCGTCTGTAGCGTTGGTCGGTGGTGGTGGAAACCCGAAACCGGGTGAAATCTCAT
TAGCGCATCAAGGTATTCTTTTCTTGGATGAGTTGCCTGAATTTAGCCGCAAAGTATTGGAAGTGCTGCGTGAGCCGTTG
GAATCGGGTGAGATTTTAATATCGAGGGCTGCACGGCAATCGACGTTCCCTGCCCAATTTCAGCTAGTAACAGCTATGAA
CCCATGCCCTTGTGGCTATTATGCCGATGGTACAGATCGTTGTCGCTGTAGTCCTGATCAGATAAGGCGTTATCAAGGCA
AGGTGTCTGGGCCGTTGTTAGATCGTATTGATCTGCAGTTGAGCGTTCAGGCGCTGTCACAGCAGGAGATGATTGAAATC
CCCCAAGCCCAAGAGTCCAGCCAGTCTGTGCGTGAAAGAGTCGTGAAATCTCGCCAAGTTCAACTCAGTCGCCAAGGTGT
ACCTAATCAGGCATTAACCGGGCCGCAGTTAGAAACGCTCTGCCAGATAGAGCAAAAAGACAAAGAGATGCTCGCTAAAG
CATTAGAGAAGTTGCAGTTGTCGGCGAGGGCTTATCATCGTGTCTTAAGGGTGGCGAGAACTATTGCGGATTTAGCTGAC
TCCGAGAAGGTCGAGCGTTCACATCTAATGGAAGCGTTAAGTTATAGGGTCGCGGCTAGAAGTAGTTTGAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.473

99.802

0.544
  comM Legionella pneumophila str. Paris

53.785

99.603

0.536
  comM Legionella pneumophila strain ERS1305867

53.785

99.603

0.536
  comM Vibrio campbellii strain DS40M4

53.8

99.206

0.534
  comM Vibrio cholerae strain A1552

53.386

99.603

0.532
  comM Glaesserella parasuis strain SC1401

52.087

99.802

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.882

100

0.452

Multiple sequence alignment