Detailed information NTG1096335

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACMXYV_RS14985
• Genome accession: NZ_CP180543
• Coordinates: 3169425..3170597 (+)
• Length: 390 a.a.
• NCBI ID: WP_415889260.1
• Uniprot ID: -
• Organism: Neptuniibacter sp. SY11_33
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3164425..3175597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYV_RS14960 (ACMXYV_14960)	-	3165094..3165699 (+)	606	WP_415889255.1	YceI family protein	-
ACMXYV_RS14965 (ACMXYV_14965)	-	3165745..3166515 (-)	771	WP_415889256.1	metal ABC transporter permease	-
ACMXYV_RS14970 (ACMXYV_14970)	-	3166515..3167414 (-)	900	WP_415889257.1	metal ABC transporter substrate-binding protein	-
ACMXYV_RS14975 (ACMXYV_14975)	-	3167395..3168504 (-)	1110	WP_415889258.1	hypothetical protein	-
ACMXYV_RS14980 (ACMXYV_14980)	-	3168620..3169273 (-)	654	WP_415889259.1	DUF1826 domain-containing protein	-
ACMXYV_RS14985 (ACMXYV_14985)	pilU	3169425..3170597 (+)	1173	WP_415889260.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACMXYV_RS14990 (ACMXYV_14990)	-	3170688..3171980 (-)	1293	WP_415889261.1	hypothetical protein	-
ACMXYV_RS14995 (ACMXYV_14995)	-	3172104..3172535 (+)	432	WP_415889262.1	hypothetical protein	-
ACMXYV_RS15000 (ACMXYV_15000)	-	3172540..3172923 (+)	384	WP_415889263.1	hypothetical protein	-
ACMXYV_RS15005 (ACMXYV_15005)	fadA	3173565..3174740 (-)	1176	WP_415889264.1	acetyl-CoA C-acyltransferase FadA	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43632.63 Da
• Isoelectric Point: 4.9682

>NTDB_id=1096335 ACMXYV_RS14985 WP_415889260.1 3169425..3170597(+) (pilU) [Neptuniibacter sp. SY11_33]
MEFKDYLTILAKRDGSDLYLTTGAPPCAKFEGKLTPLSKEPYKPGEIEEIANSLMDEQQRATFEEELEMNLAYSIPKVAR
YRINIFKQRNQYSLVARNIKADIPKMEDLGLPPVLKDVIMEKRGLVLFVGATGSGKSTSLAALIDHRNRNSGGHIITIED
PIEFVHNHRKSLINQREVGVDTRNFHSALKNALRQAPDVILIGEIRDQETMEQCLTYAETGHLAISTLHANNANQAIDRI
INFFPQARHKQIFHDLALNLKAVVSQRLIPTIEGKRCAAIEILLGTSSIQELIMKGDVKGIKEVMSKGSDTTGMQTFDDS
LFKLFDEGKITQDQAIVNADSANDMRLRMNLSVVDEKAETNGDDPEPEKQSFDEDNPLAGIKLLDEDEEV

Nucleotide

• Length: 1173 bp

>NTDB_id=1096335 ACMXYV_RS14985 WP_415889260.1 3169425..3170597(+) (pilU) [Neptuniibacter sp. SY11_33]
ATGGAATTTAAGGATTACCTTACGATTTTGGCGAAACGTGATGGCTCCGACCTCTATCTAACTACCGGCGCTCCACCCTG
TGCAAAGTTTGAAGGTAAGTTAACGCCATTAAGTAAAGAACCTTATAAACCTGGTGAGATCGAAGAGATTGCGAATTCTT
TAATGGATGAGCAGCAACGCGCTACCTTCGAAGAAGAGCTAGAGATGAACTTGGCTTATTCCATTCCTAAAGTGGCTCGT
TACCGAATCAATATCTTTAAACAACGTAACCAATACTCGCTGGTTGCACGTAATATCAAAGCCGATATTCCCAAAATGGA
AGACTTAGGCCTACCTCCTGTCCTTAAAGATGTGATTATGGAGAAACGCGGCTTAGTACTGTTTGTTGGCGCGACAGGTT
CGGGTAAATCGACATCGCTTGCGGCACTGATTGATCACCGTAACCGTAATAGCGGCGGTCACATCATTACCATTGAAGAC
CCAATCGAGTTTGTCCACAACCACCGAAAATCACTGATTAACCAGCGTGAAGTCGGGGTTGATACCCGTAACTTCCATAG
CGCTCTGAAAAACGCCCTGCGCCAAGCGCCAGATGTAATTTTGATCGGTGAGATCCGTGATCAGGAAACTATGGAACAGT
GCCTGACCTACGCAGAAACAGGACACTTAGCGATATCCACACTGCATGCTAACAACGCTAACCAAGCGATTGATCGTATT
ATTAACTTCTTCCCGCAAGCTCGACATAAACAGATCTTCCACGACCTTGCGCTTAACTTAAAAGCCGTGGTTTCTCAGCG
TCTGATCCCAACCATTGAAGGTAAACGCTGTGCTGCCATTGAGATACTTCTAGGTACTTCCAGTATCCAAGAACTGATAA
TGAAAGGTGATGTAAAAGGGATCAAAGAGGTAATGTCTAAAGGTTCTGATACCACCGGCATGCAAACCTTTGATGACTCC
CTATTCAAGCTCTTTGACGAAGGTAAGATCACGCAAGACCAAGCTATTGTTAATGCCGACTCGGCAAACGATATGCGTCT
TCGAATGAACCTTTCGGTGGTGGATGAAAAAGCAGAGACAAATGGCGATGATCCAGAACCAGAGAAACAATCCTTTGATG
AAGATAATCCACTCGCAGGGATTAAGCTATTGGATGAAGACGAAGAGGTTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	53.022	93.333	0.495
pilU	Acinetobacter baylyi ADP1	51.695	90.769	0.469
pilU	Vibrio cholerae strain A1552	46	89.744	0.413
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.529	87.179	0.379
pilT	Pseudomonas aeruginosa PAK	42.388	85.897	0.364