Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMXYV_RS01060 Genome accession   NZ_CP180543
Coordinates   240331..241845 (+) Length   504 a.a.
NCBI ID   WP_415889930.1    Uniprot ID   -
Organism   Neptuniibacter sp. SY11_33     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 235331..246845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYV_RS01035 (ACMXYV_01035) glnK 235825..236163 (-) 339 WP_415889925.1 P-II family nitrogen regulator -
  ACMXYV_RS01040 (ACMXYV_01040) - 236361..237617 (-) 1257 WP_415889926.1 ammonium transporter -
  ACMXYV_RS01045 (ACMXYV_01045) - 237656..237994 (-) 339 WP_415889927.1 P-II family nitrogen regulator -
  ACMXYV_RS01050 (ACMXYV_01050) - 238280..238534 (+) 255 WP_415889928.1 accessory factor UbiK family protein -
  ACMXYV_RS01055 (ACMXYV_01055) - 238571..240217 (+) 1647 WP_415889929.1 diguanylate cyclase domain-containing protein -
  ACMXYV_RS01060 (ACMXYV_01060) comM 240331..241845 (+) 1515 WP_415889930.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMXYV_RS01065 (ACMXYV_01065) - 241855..243573 (-) 1719 WP_415889931.1 EAL domain-containing protein -
  ACMXYV_RS01070 (ACMXYV_01070) rep 243831..245840 (+) 2010 WP_415889932.1 DNA helicase Rep -
  ACMXYV_RS01075 (ACMXYV_01075) - 245901..246320 (-) 420 WP_415889933.1 c-type cytochrome -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54091.11 Da        Isoelectric Point: 7.6974

>NTDB_id=1096323 ACMXYV_RS01060 WP_415889930.1 240331..241845(+) (comM) [Neptuniibacter sp. SY11_33]
MSLAIAYTRAQVGIDAPAVTVEVHLSGGLPSFSIVGLPEAAVKESRERVRSALINSGFEFPQRRITVNLAPADLPKEGGR
YDLAIAVGILAATNQLPAKSLADVEVIGELALSGELRPVTGVLPVALACRSEQRHLLLPEMNQNEALMASGLSVLPAGHL
LQVCAHLQGSELIPVAQAPVQPFSTDASGPDLGDVKGQAQAKRALEVAAAGGHNILLVGPPGSGKSMLANRLPGLLPQMT
EQEALEVAAVYSITQSSSETRLPRKRPFRAPHHTASSVALVGGGGNPKPGEISLAHQGILFLDELPEFSRKVLEVLREPL
ESGEILISRAARQSTFPAQFQLVTAMNPCPCGYYADGTDRCRCSPDQIRRYQGKVSGPLLDRIDLQLSVQALSQQEMIEI
PQAQESSESVRARVVRSRQVQLSRQGLPNQALTGPQLETLCQIEQKDKEMLAKALEKLQLSARAYHRVLRVARTIADLAG
SEKVERSHLMEALSYRIAARSSLN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1096323 ACMXYV_RS01060 WP_415889930.1 240331..241845(+) (comM) [Neptuniibacter sp. SY11_33]
ATGTCTTTAGCGATAGCGTATACGCGCGCGCAGGTCGGAATTGATGCGCCTGCGGTTACTGTCGAGGTTCACCTGTCTGG
TGGCCTTCCGAGTTTTTCAATAGTTGGGTTGCCTGAGGCTGCGGTAAAAGAGAGCCGCGAACGGGTACGTAGTGCTCTGA
TTAATTCAGGTTTTGAATTCCCCCAACGTCGTATCACGGTCAATTTAGCCCCAGCGGATCTGCCAAAAGAGGGTGGGCGT
TATGATTTAGCCATTGCGGTAGGCATCTTGGCTGCTACTAATCAGCTACCAGCCAAATCATTAGCTGATGTTGAGGTGAT
TGGTGAATTGGCTTTGTCGGGTGAGTTGAGGCCCGTGACTGGGGTTTTACCGGTTGCGCTCGCGTGCCGCTCCGAGCAGC
GTCATCTGTTGCTACCTGAAATGAACCAAAATGAAGCGTTAATGGCCTCGGGTTTATCGGTATTACCCGCAGGTCATCTA
CTGCAAGTCTGTGCTCATCTACAAGGTTCTGAGTTGATTCCTGTAGCGCAGGCACCAGTTCAGCCTTTTTCCACCGATGC
TTCTGGGCCTGATCTGGGCGATGTTAAAGGGCAGGCTCAAGCAAAACGCGCTTTAGAGGTTGCAGCAGCCGGTGGTCATA
ATATCTTGCTGGTGGGGCCGCCAGGCAGTGGTAAGAGCATGTTGGCTAACCGTTTGCCGGGTTTGTTACCGCAGATGACC
GAACAGGAAGCGCTGGAGGTGGCAGCTGTTTACTCTATTACTCAAAGCAGTAGTGAAACACGCTTACCCAGAAAGCGTCC
TTTCCGCGCGCCACATCACACGGCTTCGTCTGTAGCGCTGGTTGGTGGTGGCGGCAACCCGAAACCAGGTGAAATCTCAT
TAGCGCATCAAGGTATTCTTTTTTTGGATGAATTGCCTGAATTTAGCCGCAAAGTGTTGGAGGTGCTGCGAGAGCCGTTG
GAATCAGGTGAGATTCTAATCTCACGGGCTGCACGGCAATCGACGTTCCCAGCTCAATTTCAGTTAGTAACAGCTATGAA
CCCATGCCCTTGTGGCTATTATGCTGATGGTACAGATCGTTGTCGCTGTAGTCCTGATCAGATAAGGCGTTATCAAGGCA
AGGTATCTGGACCGTTGTTAGATCGTATTGACCTGCAGTTGAGCGTTCAGGCGCTGTCACAGCAGGAGATGATTGAAATC
CCTCAAGCTCAAGAGTCGAGTGAGTCTGTGCGTGCAAGGGTAGTGAGGTCTCGCCAAGTTCAACTCAGCCGCCAAGGTTT
ACCTAATCAAGCCTTGACTGGGCCGCAGTTAGAAACGCTCTGCCAGATAGAACAAAAGGACAAAGAGATGCTCGCTAAAG
CATTAGAGAAGTTGCAGTTGTCGGCGAGGGCGTATCATCGTGTCTTAAGGGTGGCGAGAACTATTGCGGATTTAGCTGGC
TCTGAGAAGGTCGAGCGTTCACATCTAATGGAAGCGTTAAGTTATAGGATCGCGGCTAGAAGTAGCTTGAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.274

99.802

0.542
  comM Vibrio campbellii strain DS40M4

54.4

99.206

0.54
  comM Vibrio cholerae strain A1552

53.984

99.603

0.538
  comM Legionella pneumophila str. Paris

53.213

98.81

0.526
  comM Legionella pneumophila strain ERS1305867

53.213

98.81

0.526
  comM Glaesserella parasuis strain SC1401

52.485

99.802

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.129

99.802

0.45

Multiple sequence alignment