Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACMZ68_RS00810 Genome accession   NZ_CP180522
Coordinates   172329..173462 (-) Length   377 a.a.
NCBI ID   WP_415871602.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP5091     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 167329..178462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS00785 (ACMZ68_00785) yeaM 167502..168266 (-) 765 WP_415871600.1 AraC family transcriptional regulator -
  ACMZ68_RS00790 (ACMZ68_00790) nepI 168288..169502 (-) 1215 WP_415871601.1 MFS transporter -
  ACMZ68_RS00795 (ACMZ68_00795) - 169638..170291 (+) 654 WP_079380979.1 TetR/AcrR family transcriptional regulator -
  ACMZ68_RS00800 (ACMZ68_00800) - 170395..171315 (+) 921 WP_081038521.1 DMT family transporter -
  ACMZ68_RS00805 (ACMZ68_00805) yrdC 171708..172277 (-) 570 WP_005072030.1 L-threonylcarbamoyladenylate synthase -
  ACMZ68_RS00810 (ACMZ68_00810) dprA 172329..173462 (-) 1134 WP_415871602.1 DNA-processing protein DprA Machinery gene
  ACMZ68_RS00815 (ACMZ68_00815) tsaP 173483..174637 (-) 1155 WP_415871603.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACMZ68_RS00820 (ACMZ68_00820) def 174760..175290 (+) 531 WP_002114101.1 peptide deformylase -
  ACMZ68_RS00825 (ACMZ68_00825) - 175334..175759 (+) 426 WP_002114087.1 DUF2946 family protein -
  ACMZ68_RS00830 (ACMZ68_00830) oprC 175832..177931 (+) 2100 WP_271649580.1 TonB-dependent copper receptor -
  ACMZ68_RS00835 (ACMZ68_00835) - 177985..178191 (+) 207 WP_086398779.1 hypothetical protein -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41830.35 Da        Isoelectric Point: 6.5419

>NTDB_id=1096165 ACMZ68_RS00810 WP_415871602.1 172329..173462(-) (dprA) [Acinetobacter pittii strain AP5091]
MLTQLSPHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLTEQI
QQYTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYVRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=1096165 ACMZ68_RS00810 WP_415871602.1 172329..173462(-) (dprA) [Acinetobacter pittii strain AP5091]
ATGCTTACTCAACTTTCTCCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAACTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGTTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTCGGAAAAGGCCAAGCTCAAGCTTTGTTGCAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGATTGGCATATGGG
ATTGACGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTAGCTCAAAACGGCGCGATTATTACTGAGTTTTTGCCTGGGACAC
CTCCACTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACA
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCTGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCTACTCAATGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTGTAGTTTCTAGTACTCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATGTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.716

100

0.907

  dprA Acinetobacter baumannii strain A118

90.186

100

0.902

  dprA Acinetobacter baylyi ADP1

70.866

100

0.716

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387


Multiple sequence alignment