Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMXYH_RS31435 Genome accession   NZ_CP180479
Coordinates   6795176..6796669 (+) Length   497 a.a.
NCBI ID   WP_415765917.1    Uniprot ID   -
Organism   Pseudomonas sp. ZB1P45     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6790176..6801669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYH_RS31405 - 6790769..6792106 (-) 1338 WP_033060693.1 ammonium transporter -
  ACMXYH_RS31410 glnK 6792142..6792480 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACMXYH_RS31415 - 6792900..6793160 (+) 261 WP_008076132.1 accessory factor UbiK family protein -
  ACMXYH_RS31420 - 6793572..6794099 (+) 528 WP_415765916.1 Bro-N domain-containing protein -
  ACMXYH_RS31425 - 6794152..6794457 (-) 306 WP_030129123.1 HigA family addiction module antitoxin -
  ACMXYH_RS31430 - 6794466..6794672 (-) 207 WP_415767771.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACMXYH_RS31435 comM 6795176..6796669 (+) 1494 WP_415765917.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMXYH_RS31440 - 6796687..6797022 (+) 336 WP_415765918.1 hypothetical protein -
  ACMXYH_RS31445 - 6797103..6798317 (-) 1215 WP_415765919.1 aldose 1-epimerase family protein -
  ACMXYH_RS31450 - 6798429..6800405 (-) 1977 WP_415765920.1 methyl-accepting chemotaxis protein -
  ACMXYH_RS31455 - 6800589..6801509 (-) 921 WP_046053830.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52953.13 Da        Isoelectric Point: 8.3558

>NTDB_id=1096054 ACMXYH_RS31435 WP_415765917.1 6795176..6796669(+) (comM) [Pseudomonas sp. ZB1P45]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDIECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSNGLLYASKPYPDLNEVQGQISAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVTSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAAVLVANARERQNIRQGCANAFLDLPGLRRHCKLSTTDEAWLETACERLTLSLRSAHRLLKVARTLADLEQVNA
ITRAHLAEALQYRPASA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1096054 ACMXYH_RS31435 WP_415765917.1 6795176..6796669(+) (comM) [Pseudomonas sp. ZB1P45]
ATGTCCCTCTCCATCGTTCACAGCCGCGCCCAGATTGGTGTCGATGCGCCCGCCGTTACCGTAGAAGTCCATCTGGCCAA
CGGTCTGCCGTCATTGACGATGGTTGGTTTACCCGAAGCGGCAGTAAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGCAATTCCCTGCGCGGCGCATCACGCTGAATCTCGCGCCTGCGGACTTACCTAAGGATGGCGGACGG
TTTGATCTGGCGATTGCCTTGGGGATTCTGTCCGCCAGCGTGCAGGTGCCGACGCTGACGCTGGATGACATTGAATGCCT
GGGAGAGTTGGCGCTGTCAGGCGCGGTACGTGCCGTGAGAGGCGTGTTGCCGGCCGCGCTGGCCGCACGAAAGGCCGGGC
GCTCGTTGATGGTGCCGCGGGCGAACGCCGAGGAGGCGTGCCTGGCGTCGGGGTTGAAGGTGTTTGCCGTGGATCACCTG
CTGGAAGCCGTTGCGCACTTCAATGGACATACGCCGGTCGAGCCCTACGTTTCCAACGGGTTGCTCTACGCCAGCAAGCC
GTATCCCGACTTGAATGAGGTGCAGGGGCAAATCTCGGCCAAGCGCGCATTGCTGATTGCGGCGGCTGGGGCTCATAACC
TGCTGTTTAGCGGACCGCCGGGAACCGGGAAAACGCTGTTGGCGAGTCGTTTGCCGGGCCTGCTCCCTCCTTTGGCCGAA
AACGAGGCGCTGGAAGTCGCAGCTATTCAATCCGTCACCAGTTGCGTGCCCTTGAGCCACTGGCCGCAAAGACCATTCCG
CCAGCCCCATCACTCCGCCTCGGGCCCGGCATTGGTGGGCGGTGGTTCGAAACCGCAACCCGGCGAAATAACTCTCGCCC
ACCATGGCGTTCTGTTTCTCGATGAGCTTCCGGAATTCGATCGCAAGGTGTTGGAGGTTTTAAGAGAGCCGTTGGAATCC
GGCCACATCGTGATTTCCCGCGCCAAGGATCGCGTGAGGTTTCCGGCGCGCTTTCAACTGGTGGCCGCGATGAACCCGTG
TCCCTGTGGATATCTCGGCGAACCCAGCGGCAAATGCAGTTGTACACCGGACATGGTCCAGCGTTATCGCAACAAATTGT
CGGGGCCTCTGCTGGACCGGATCGACCTGCACCTGACTGTCGCTCGGGAGGCCACAGCGTTGAATCCTGCGCTCAAACCC
GGCGATGACACCGCCACTGCTGCGGTTCTGGTCGCCAACGCCCGGGAGCGTCAAAACATACGCCAAGGCTGTGCCAACGC
ATTTCTTGATTTGCCAGGGCTGCGTCGACACTGCAAGTTATCCACAACCGACGAAGCGTGGCTGGAAACTGCTTGCGAGC
GTTTGACCTTGTCACTCCGGTCGGCCCACCGTCTGCTCAAAGTAGCCCGTACATTGGCAGACCTTGAACAGGTGAATGCA
ATTACACGCGCGCACTTGGCGGAAGCATTGCAATATCGACCAGCCTCAGCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50.402

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.709

100

0.461

Multiple sequence alignment